Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1942 ATGACACCCACTACCACTTCTTCCCTTCTCTTCCTTCTCTTCTCTCTCCTCACCCCAACCCTCATTTCCTCTTCCCCTCTTCACGACCCAGAATTTATCACACATGAAGTAAACAGGAAAATCAATGCGTCTATGGCTAGGAGGAACTTGGGGTACCTGTCATGTGGGACAGGGAACCCAATTGACGATTGTTGGAGGTGTGACCCAAATTGGGAGAAGAACCGTCAGAGGCTAGCAGATTGCGCAATTGGGTTCGGAAAGAACGCAATCGGAGGCAGAGACGGCAAAATCTACGTGGTCACAGACTCAGGGGACGATGATCCAGTGAGCCCAAAACCAGGAACACTTCGCTACGCCGTGATTCAGGATGAGCCGTTGTGGATCATATTCGCGAGGGACATGGTGATTCAGCTGAAGGAAGAGCTGATCATGAATTCCTTCAAGACAATCGACGGTAGAGGAGCTAGCGTCCACATCGCTGGGGGTCCATGCATAACCATACAGTATGTGACGAATGTAATTGTACATGGGATTCACATACATGATTGTAAGCAAGGGGGGAATGCTATGGTGAGAGACTCGCCTAGGCACTATGGGTGGAGGACCATATCGGACGGTGATGGTGTGTCGATCTTTGGAGGGAGTCATGTTTGGGTGGATCATTGCTCTTTGTCTAACTGCAATGATGGGTTGATTGATGCGATACATGGGTCCACAGCAATTACTATCTCCAACAATTACATGACACACCATGATAAGGTCATGTTGTTGGGTCATAGTGATACATATACTCAAGACAAGAACATGCAGGTCACCATTGCCTTTAACCACTTTGGTGAAGGTCTTGTTCAGAGGATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCCACCATCAATAGCCAGGGCAACAGATTTGTTGCCCCAGATAACAGATTCAGCAAAGAGGTGACAAAACATGAGGATGCACCAGAGAGTGAATGGAAGGGTTGGAATTGGAGGTCAGAAGGGGACTTATTGGTAAATGGTGCATTTTTCACAGCATCAGGATTTGGTGCCTCTTCAAGCTATGCAAGGGCTTCAAGCTTAAGTGCAAGACCATCTTCACTTGTTGGTTCCATAACTACCACTGCTGGTGCACTCAATTGTAAGAAGGGCTCTCGTTGCTGA 1224 0.4755 MTPTTTSSLLFLLFSLLTPTLISSSPLHDPEFITHEVNRKINASMARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVSPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGIHIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGFGASSSYARASSLSARPSSLVGSITTTAGALNCKKGSRC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Aev01g1942 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Aev01g1942 407 PANTHER PECTATE LYASE 6 404 - -
Aev01g1942 407 Pfam Pectate lyase 142 324 IPR002022 -
Aev01g1942 407 SMART amb_all 133 330 IPR002022 -
Aev01g1942 407 PANTHER PECTATE LYASE 18-RELATED 6 404 IPR045032 GO:0030570
Aev01g1942 407 SUPERFAMILY Pectin lyase-like 43 401 IPR011050 -
Aev01g1942 407 Gene3D - 58 400 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1942 Aev-Chr1 24282139 24284422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1942 1 407 Polysaccharide Lyase AT5G63180 79.951 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1942 K01728 - gmx:100101868 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1942 01 24282139 24284422 Aev04g1515 04 10925513 10929142 ECH
Aev01g1942 01 24282139 24284422 Aev01g1942 01 24282139 24284422 ECH
Aev01g1942 01 24282139 24284422 Aev08g2348 08 22580225 22583750 PCT