Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1940 ATGGATGGGAGGAGGCATTCAGTTGATATTCCAATTTCTAAGACTCTTGTGGCACTGAGAAGGGTCAGGTCACTGAGGGATCCATCAACTAACTGCATTAGCAAACTCTCTCCTTTGATTGATAATGTGAAATGGGAAAACGGTTCTGGTAATGGGATTTCTCTGAGGTTCCTGGATTCTTCTCATGCATGTGGTTCTAATGAAAATGGTGCTTTGAGATCAAAGAATTTAGACCTTAAGGGGCGGCGAGAGCAGGATACCACTGATTTTGAATTGAGTTGTGGCCTGTTGAACTCTAAGTTGAACTTTTTCGGTACCTCGTGTTGTGAACAAGAACATGAACTGAATAAATCACCAAGTGAAAGCTGTTGTAGCAACCATGGGGGCAGGGGATTGGATTCGGCTTGCATCATGCCTCGTGTTAATCATTTGAAGGATGGGGAACCACTCTACTCGTCATCACAATTAGGGAGAATAGATCAATCGAAGTCAACCCGAAAATTGCAACGTAAGACTCTAGCGAAACCATCTGATGTGATGGGTGATATTGCGAGCCATGTAGGTAGTCCATGCCTTTCTGCAGGTGATGCTTTCTCAGCACGTAGTGCCTCGGTTCATGTAAGTCAAGATGTTGATGCTTTGGATAAACACAATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCCCCAAGGTTTAGAGAATTAAATCATTATTCTGAAGTAGAAGGCCTTCCCTTGTTGCAGCAGGACAATGAGATCAATCTTTATGGACATGGAAGCATGAGACATATTGGCGGTGAAGGTAGTAGTCCAAATCTGGAAACTCCAAGATGTTTATCCATGAAGTTTAGGCCAAAATCTTTTAGTGATTTGGTGGGCCAAAATGTAGTTGGAAGGTCTCTTTTGGGTGCCATTTCCAGTGGAAGGATAACATCATTTTATCTCTTCCATGGTCCACGTGGTACCGGCAAGACCTCAGCATCCAGGATATTTGCTGCAGCACTGAATTGCCTCTCCCTTAAGGAGGAAAGGCCATGTGGTATGTGCAGAGAATGTGTTCTGTTCTTTTCTGGAAAAAGTAAGGATGTTAAGGAAGTTGATTCTTTGAGAATCAATCATGCAGACAAGGTTAAATCGCTGGTTAAGGAAGCTTGCATGCCTCCAGTTTCCTCGCGCTTTAAGGTTTTCATCATTGATGAGTGCCAGTTCTTGCATGGGGAAACATGGGCTAGTCTTTTGAATAGCCTAGATAATGTTTCTCAGCATGTGGTTTTTGTGATGATCAGTCCTGATTTGGATAACCTCCCTAGAAGCGTGGTTTCTCGAGCGCAGAGGTATCACTTCCCAAAGATTAAAGATGCTGACATTGCAAGCAGATTGGGAAAAATTTGTGTTGAAGAAGGTCTTGATTTTGAACAAGTTGCTTTGGACTTTATTGCTGCTAAATCTTGTGGTTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACACTTTCCTTAGCCCATGAGCTTACTGGGGTCGTTTCGGATGATGAATTGCTTGATTTGTTGGACCTGGCTTTGTCATCTGACACTTCAAATACGGTGATAAGAGCCCGGGAGCTAATGAGATCAAGGATAGATCCTTTGCAACTCGTATCGCAGCTGGCAAATCTTATTATGGACATCCTTGCAGGGAATTGTGCAGCTGGTAGTTCTGAAATCAGAAGAAGATTTTCTAATAGACATACCTCGGAGGCAGACCTGCAGAAACTAAGTCATGCATTAAGAGTACTTTCTGAAACAGAGAAGCAATTGAGAATTTCTAAGAATCAAAGAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCGCCGTAGACTACTCATCTGTGGATGCAAATGATGCCAAGTTATATTTGAGAGCTGCGGCTAATAAAGATGGTGATTTCTGCAGTACATCATCTACAGGTGAGAGCTTGAAGCATCTTGCTACGGCTCAGTGTGATGAGAAGTCGTATAGATTAGGAGTGAAGGAAGATCACAAAGGAACGTTGGATTCCATATGGCATAAAGCTACAGATATATGTCAATCTAGAAGGTTCAAGACATTTCTCAGGAAGCAAGGGAAGTTGTCTTCGCTTTGTGTTAATCAAGGCCTTGCGATTGCTGAGTTGGAATTCCATCATCGTGACTATGTAACTAGAGCCGAGAAGTCGTGGAAACTGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAATGTTGAGCTCAGGATCAATCATGTACCTTGTACTTCAGATTCCAAGTATGCTAAATTGAAGAGATCATCTTTCAATATCTTCAATTGTTCCCGCAGAATTCTACGAAAATCACTATCATTCAATGAACTAGGAAGCGAATCAGACTATGCTGATCAAACCTCTCAAAAGCCCATGATGAAGATGTCAGGTCAAGAGACTCCAAGGATTTCATGTTCTAGAGTTGATTCTCTCAAGGAAGAGGGATGCAATTACGTACAAGTAGCTTCATCGACCCTTGATTTAGGTTATCAGTCTAACTGTTTTCCTCGAACCCTTCGGCTTCATAAGAAGTTGCATTCTTCACATGCATCACATCAGAAGGATTTTGTTTTATCAAGCCCATCTCGCAACTCAAACTACTGTTCCAAAGCCGCAAGTTGA 2685 0.4216 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNCISKLSPLIDNVKWENGSGNGISLRFLDSSHACGSNENGALRSKNLDLKGRREQDTTDFELSCGLLNSKLNFFGTSCCEQEHELNKSPSESCCSNHGGRGLDSACIMPRVNHLKDGEPLYSSSQLGRIDQSKSTRKLQRKTLAKPSDVMGDIASHVGSPCLSAGDAFSARSASVHVSQDVDALDKHNGCGISCCWSKSPRFRELNHYSEVEGLPLLQQDNEINLYGHGSMRHIGGEGSSPNLETPRCLSMKFRPKSFSDLVGQNVVGRSLLGAISSGRITSFYLFHGPRGTGKTSASRIFAAALNCLSLKEERPCGMCRECVLFFSGKSKDVKEVDSLRINHADKVKSLVKEACMPPVSSRFKVFIIDECQFLHGETWASLLNSLDNVSQHVVFVMISPDLDNLPRSVVSRAQRYHFPKIKDADIASRLGKICVEEGLDFEQVALDFIAAKSCGSLRDAEMMLDQLSLLGKKITLSLAHELTGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGNCAAGSSEIRRRFSNRHTSEADLQKLSHALRVLSETEKQLRISKNQRTWFTAALLQLSAVDYSSVDANDAKLYLRAAANKDGDFCSTSSTGESLKHLATAQCDEKSYRLGVKEDHKGTLDSIWHKATDICQSRRFKTFLRKQGKLSSLCVNQGLAIAELEFHHRDYVTRAEKSWKLIASSLQFILGCNVELRINHVPCTSDSKYAKLKRSSFNIFNCSRRILRKSLSFNELGSESDYADQTSQKPMMKMSGQETPRISCSRVDSLKEEGCNYVQVASSTLDLGYQSNCFPRTLRLHKKLHSSHASHQKDFVLSSPSRNSNYCSKAAS* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1940 894 SUPERFAMILY post-AAA+ oligomerization domain-like 516 627 IPR008921 GO:0003677|GO:0006260
Aev01g1940 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 500 IPR027417 -
Aev01g1940 894 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 98 812 - -
Aev01g1940 894 CDD HLD_clamp_pol_III_gamma_tau 451 514 IPR045085 -
Aev01g1940 894 Gene3D - 452 514 - -
Aev01g1940 894 Pfam DNA polymerase III, delta subunit 296 451 - -
Aev01g1940 894 CDD AAA 292 442 - -
Aev01g1940 894 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 98 812 - -
Aev01g1940 894 MobiDBLite consensus disorder prediction 873 894 - -
Aev01g1940 894 Gene3D - 515 628 - -
Aev01g1940 894 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 279 624 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Aev01g1940 894 Gene3D - 272 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1940 Aev-Chr1 24260295 24263858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1940 270 607 Core DNA Replication Machinery Family AT1G21690 25.146 2.07e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1940 - - pvu:PHAVU_003G207500g 1197.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1940 01 24260295 24263858 Aev01g1940 01 24260295 24263858 ECH
Aev01g1940 01 24260295 24263858 Aev08g2351 08 22603827 22607087 PCT