Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1921 ATGGCAGTGTATGGTGGAAGCAGTGCTTGTATCTCATCCTGTGTTGCAACACCAACCACCAACAAGTTCATCATCTCGGCCTCAGCCACCACTCACTACTCTCCTCTTTCAGCATTCCCTTCCAAATCCCATCTCTTCTCACATCGCCCACTCTCCAATTCAACTCCTCATGCCAAATCCCTCCGCGCCAGAACCTCCACCAATCCCGGAATCTTCCTTCCCCACTTAATTGCTTCTCTGGAACAGGTTGACCAGACTTACATCATGGTGAAGCCCGATGGTGTGCAACGTGGCCTCGTGGGAGAAATCATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGGTTGAAGCTCTTCCAGTGCTCAAAAGAATTAGCAGAGGAGCATTACAAGGACCTTAAGGGGAAGTCATTCTTCCCTAAGTTGATTGACTATATCACTTCGGGCCCTGTTGTTTGTATGGCTTGGGAGGGTGTTGGAGTAGTCGCATCAGCTCGTAAGCTTATAGGGGCTACAGACCCTCTTCAAGCCGAACCGGGCACAATAAGAGGAGATCTGGCTGTTCAGACAGGAAGGAATATTGTTCATGGCAGTGACAGCCCTGAAAATGGCAAACGTGAAATCGGTCTTTGGTTCAATGAAGCTGAAATAATCCAGTGGACTCCTGCCCAAGCACCATGGCTTAGAGAATAA 696 0.4842 MAVYGGSSACISSCVATPTTNKFIISASATTHYSPLSAFPSKSHLFSHRPLSNSTPHAKSLRARTSTNPGIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKGKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFNEAEIIQWTPAQAPWLRE* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1921 231 CDD NDPk_I 85 213 - -
Aev01g1921 231 ProSitePatterns Nucleoside diphosphate kinases active site. 194 202 IPR023005 -
Aev01g1921 231 PRINTS Nucleoside diphosphate kinase signature 150 167 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aev01g1921 231 PRINTS Nucleoside diphosphate kinase signature 171 187 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aev01g1921 231 PRINTS Nucleoside diphosphate kinase signature 130 149 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aev01g1921 231 PRINTS Nucleoside diphosphate kinase signature 86 108 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aev01g1921 231 PRINTS Nucleoside diphosphate kinase signature 194 213 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aev01g1921 231 SMART ndk_5 83 220 IPR034907 -
Aev01g1921 231 Gene3D - 79 231 IPR036850 -
Aev01g1921 231 SUPERFAMILY Nucleoside diphosphate kinase, NDK 84 229 IPR036850 -
Aev01g1921 231 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 31 230 - -
Aev01g1921 231 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 31 230 - -
Aev01g1921 231 Hamap Nucleoside diphosphate kinase [ndk]. 83 218 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Aev01g1921 231 Pfam Nucleoside diphosphate kinase 85 218 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1921 Aev-Chr1 24159766 24161719 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1921 K00940 - gmx:100500478 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1921 01 24159766 24161719 Aev01g1921 01 24159766 24161719 ECH
Aev01g1921 01 24159766 24161719 Aev05g1579 05 12296198 12300287 PCT