LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g1911	ATGGCGGCAGGGTGTAAAAGTGTTCTGAGGAGAAGAGAATCTTACGAACATAGTTCCGAGAAGGAGCTTTATCACTGTAAGAATGGTTCTCTACAGAATGGGTTTCATGGTGGAAAAGAGGAGGGTGAGGTCTATGTCGAACGTGATGCGTATGCTCGTACCTCACGGTTTCAGGCAGGCCGTGGTGATGAAGGCTTGCCACCGCCGGAGAAGAGAAGAAAATTTTCTCCGATCGTGTGGGACCTGCCAGAGAAGGGAGGAAGATCCTCTTCCAAAAATAGGGTAACACAGGTTGCTCATGGGTCCTTGGATGATGAAGAATCTCGTCCATCCCTTCCTAGAAGCCCTGTAGATGATAGTGATTTGCATGGAGGTGCTGCCAAGATGCCTCCACCAAATTCCTCTAATGTTTTGGCTTCAGGGGATGATGAACAAGATGCGGGTGAAGAGAACAAGGTGCAAGGATGGAACATCAAAATGTCTAGATGGGCTTTGGATGGTCAATCACCAAGTCTTGTTGGTGATGAATTCAAGCATGGCAAAACGAGCTCAAGTCCTGAATCTGGTGAATTCCGAAGAGAATGTTCGGAGAGCACAATCACTAGGTCATCGGGAAGCAGTGGAAGAGATCATTGTATGGGCCCTTCTAGTTATGATACTGATTCTGAAAATGAGTTCCCTTCTGACTCCATGGATGATGTTGAGGAACAAAGTGATGTTAGTGATTCTCCATCAGATTCTGATGAAAGTGGTGGTTTGATGAACGTGCAGAGAAATATAAACATGCTTCAGGGTTGCAGAAGTGTGTGCGAGTTTGAAATGATTAAGAAAATAAATGAAGGGACTTATGGTGTTGTCTATAAGGCTAGGGATAAGAAGACTGGGGAACTAGTAGCCTTGAAGAAGGTGAAGATGAACATTGAAAAGGATGGGTTTCCAATGTCTTCCTTGAGGGAAATAAACATTCTCTTGTCTTTCAACCACCCATCGATTGTGGATGTCAAAGAAGTAGTTGTAGACAACTATGATGGTACTTTTATGGTGATGGAATACATGGAGCATGACCTCAAGGGGCTCTTGGAGGCTAAGAAACAACCCTTCAGTATGGGCGAAATAAAATCCTTGATGCTGCAACTTCTCGAAGGTGTCAAGTATCTCCACGATAATTGGGTTCTCCATCGGGACTTGAAGACGTCAAACATTCTGCTGAACAATGAAGGAGAGCTGAAAATATGTGACTTTGGGCTGTCACGGCAATTTGGAAGCCCACTGAAGCCATATACTCCTCTCGTGGTCACACTATGGTACAGAGCACCTGAACTTCTGTTAGGCGCTAAAGAATATTCAACAGCAATTGACATGTGGTCGGTGGGTTGCATAATGGCCGAGTTGATCGCTAAGGAACCTCTGTTCAAGGGTAAAACAGAACTTGAACAACTTGATAAGATTTTTAGGACCCTGGGTACACCAGATGAGAAAATCTGGCCAGGATTATCAAAACTACCTGGTTCTAAAGCAAAGTTTGTTAAGCAACCGTTTAACATGTTAAGGAGGAAATTTCCAGCCGCATCTTTCACAGGTTCACCAGTTCTATCTGAGCTCGGATTCGACTTGTTGAAGAAGCTTCTAACTTATGACCCTGAAGAGAGGATAACAGCAGAGGATGCTCTGCTTCATGATTGGTTCCATGAAGCCCCCCTTCCAAAGTCTGATTTCAGGCCTATTTTCCCTTCTTGGCGTGGCTAG	1746	0.4462	MAAGCKSVLRRRESYEHSSEKELYHCKNGSLQNGFHGGKEEGEVYVERDAYARTSRFQAGRGDEGLPPPEKRRKFSPIVWDLPEKGGRSSSKNRVTQVAHGSLDDEESRPSLPRSPVDDSDLHGGAAKMPPPNSSNVLASGDDEQDAGEENKVQGWNIKMSRWALDGQSPSLVGDEFKHGKTSSSPESGEFRRECSESTITRSSGSSGRDHCMGPSSYDTDSENEFPSDSMDDVEEQSDVSDSPSDSDESGGLMNVQRNINMLQGCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIEKDGFPMSSLREINILLSFNHPSIVDVKEVVVDNYDGTFMVMEYMEHDLKGLLEAKKQPFSMGEIKSLMLQLLEGVKYLHDNWVLHRDLKTSNILLNNEGELKICDFGLSRQFGSPLKPYTPLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIAKEPLFKGKTELEQLDKIFRTLGTPDEKIWPGLSKLPGSKAKFVKQPFNMLRRKFPAASFTGSPVLSELGFDLLKKLLTYDPEERITAEDALLHDWFHEAPLPKSDFRPIFPSWRG*	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g1911	581	ProSiteProfiles	Protein kinase domain profile.	272	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aev01g1911	581	PANTHER	CYCLIN-DEPENDENT KINASE	187	580	-	-
	Aev01g1911	581	MobiDBLite	consensus disorder prediction	99	116	-	-
	Aev01g1911	581	MobiDBLite	consensus disorder prediction	1	22	-	-
	Aev01g1911	581	Gene3D	Transferase(Phosphotransferase) domain 1	354	573	-	-
	Aev01g1911	581	MobiDBLite	consensus disorder prediction	65	79	-	-
	Aev01g1911	581	SUPERFAMILY	Protein kinase-like (PK-like)	265	567	IPR011009	-
	Aev01g1911	581	MobiDBLite	consensus disorder prediction	180	197	-	-
	Aev01g1911	581	PANTHER	CELL DIVISION PROTEIN KINASE	187	580	-	-
	Aev01g1911	581	Gene3D	Phosphorylase Kinase; domain 1	259	353	-	-
	Aev01g1911	581	MobiDBLite	consensus disorder prediction	198	224	-	-
	Aev01g1911	581	MobiDBLite	consensus disorder prediction	54	253	-	-
	Aev01g1911	581	CDD	STKc_CDC2L1	266	562	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Aev01g1911	581	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	391	403	IPR008271	GO:0004672\|GO:0006468
	Aev01g1911	581	MobiDBLite	consensus disorder prediction	225	243	-	-
	Aev01g1911	581	Pfam	Protein kinase domain	272	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aev01g1911	581	SMART	serkin_6	272	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g1911	Aev-Chr1	24083942	24086089	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev01g1911	265	568	Core Cell Cycle Gene Families	AT5G10270	46.875	6.37e-89	282

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Aev01g1911		Pkinase	2.5e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g1911	K08818		-	gmx:100788840	763.451