Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1908 ATGGCTACTTGTACTTCCATTTCATTGTGCCCTCACTCCCTCTGTTACCGCTCTCGCCCCACAAGGCCTTCCCTTTCTTGCTCTTTTCCCTCTTCTGCTCTCCCAGATAATGGTGGATCTAAAGTACCACAGAAGCGATCAAGAAGAATAGAAGGTCCAAGAAAAAGCATGGAAGACTCAGTTAAACGTAAGATGGAGCAATTTTATGAAGGATCCGATGGACCACCCCTCCGAGTTCTTCCTATTGGTGGATTAGGCGAAATTGGAATGAATTGCATGCTTGTCGGTAACCACGACCGCTACATCCTCATAGATGCTGGCGTCATGTTTCCAGACTATGATGAGCTTGGAGTCCAAAAAATCATACCTGATACAACATTTATAAAAAAGTGGAGCCACAAAATCGAAGCAGTTGTCATAACACACGGGCATGAAGATCATATTGGTGCGTTACCTTGGGTCATCCCAGCATTGGATTCTCATACACCTATTTTTGCTTCATCCTTCACAATGGAGCTTATTAGGAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCCAGACTCAAAGTTTTTAGAACAAGGAAGAAATTTATCGCTGGGCCATTTGAGATAGAGCCTATCACGGTGACCCATTCTATTCCTGATTGTTGTGGATTAGTTCTTCGTTGTTCTGATGGGACTATTCTTCACACTGGGGACTGGAAGATTGATGAAAATCCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTAACATTGATGATGAGCGATTCAACAAATGTACTTTCACCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCAAGTTTCAGCTGCTAAGGGAAGGGTTATTACAACGCAGTTTGCATCTAATATACATCGTTTAGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGCTGGTATTTGTCGGCATGTCTTTAAGGACATATCTAGAAGCTGCTTGGAAGGATGGAAAGGCTCCAATGATCATCCACTCTGAGGATATTGATGCTTACGCTCCGAAAGATCTGCTAATTGTAACAACCGGTTCTCAAGCAGAACCACGTGCTGCCTTGAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAACTGACGAAGGAAGATGTTGTCTTGTATTCAGCTAAGGTTATCCCTGGTAATGAATCCCGTGTTATGGAAATGCTAAACCGCATATCAGAAATTGGATCGACAATAGTTATGGGGAAGAATGAATGCCTGCACACATCTGGTCATGGGTACCGTGGAGAACTGGAGGAAGTACTTAGAATTGTGAAGCCACAACATTTTCTTCCCATACACGGAGAACTCTTGTTTCTGAAGGAGCATGAATCACTTGGAAAGTCAACTGGCATTCGGCACACTACTGTTATTAAAAATGGAGAGATGCTTGGTGTTTCACATTTAAGAAACAGAAGAATCCTTTCTAATGGTTTCATTTCACTTGGAAAAGAAAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTACATCAAGCGACCTCTTCATTGATGAAAGAATGAGAATTGCCTTAGATGGCATCATTGTGGTCAGTATGGAAATATTCCGCCCTCAAGATTTAGACGATCCTGCCGAGAACACCTTAAAAGGCAAGATAAGAATTACCACAAGATGCCTATGGCTCGACAAAGGGAAGTTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAAGTGTCCACTGTCTCACATGGAAAGAACCGTGTCTGAGATGCTGAGGAAAATGGTGAGAAAGTACAGTGGAAAACGTCCTGAAGTTATTGCCATCGCTGTAGAAAATCCTGAAGCTGTTGTCGCAAACGAAGTAAACACAAGGTTGTCTGGCAAATCCGATTTGGGTGCAGTATCAAGATTAAGAAAAGTGCTGGATGGACATGGGAAGGAAAATCAGTCCACCAAAGTGCGAATAGGAGGACTGTCATGTGAGGAAGACACCGCCACCTCAAGTGGAGCTGATGATGATTTGTCTGACACGGATGATCAAGATGAAATTTTGAAGCCATTCATTGAGTCCTCACCGGTTGAGAAATCAATCAAGGTTAACAATGGTTATCTTCCTCGAAAGGAAAATAAGTCCCAACTGAAGAATGATGGTTCTGAAGAACCTGAAGAATGCATGTCCGAAAAGACATCAAATTCTGAATCGAAGGCTTCAAAATCGGTGAAGAGAAATAAATGGAAACCTGAGGAAGTTAAGAAACTGATTGGTATGCGCGGGGAGCTGCATGACAAATTTCAAGCTGCGAAAGGAAGGATGGCCCTTTGGGAAGAATTATCTCAGAACTTGTCGGCTAACGGGATCAGCAGAAGTCCCGATCAGTGCAAATCTCTATGGACATCTTTGGTACAGAAATTTGAGGAAATCAAGAATGAGAACAACAGCAAAAGAAAATGGCTATATCTTGATGACATGGAAAGGATTCTGTCTGAAAACGAGGCACTAGCGACAAAATGA 2571 0.4228 MATCTSISLCPHSLCYRSRPTRPSLSCSFPSSALPDNGGSKVPQKRSRRIEGPRKSMEDSVKRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFIAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDENPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRQVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPMIIHSEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHESLGKSTGIRHTTVIKNGEMLGVSHLRNRRILSNGFISLGKENLQLKYSDGDKAFGTSSDLFIDERMRIALDGIIVVSMEIFRPQDLDDPAENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVKCPLSHMERTVSEMLRKMVRKYSGKRPEVIAIAVENPEAVVANEVNTRLSGKSDLGAVSRLRKVLDGHGKENQSTKVRIGGLSCEEDTATSSGADDDLSDTDDQDEILKPFIESSPVEKSIKVNNGYLPRKENKSQLKNDGSEEPEECMSEKTSNSESKASKSVKRNKWKPEEVKKLIGMRGELHDKFQAAKGRMALWEELSQNLSANGISRSPDQCKSLWTSLVQKFEEIKNENNSKRKWLYLDDMERILSENEALATK* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1908 856 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 429 476 IPR011108 -
Aev01g1908 856 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 856 - -
Aev01g1908 856 Gene3D - 765 826 - -
Aev01g1908 856 MobiDBLite consensus disorder prediction 718 763 - -
Aev01g1908 856 ProSiteProfiles Myb-like domain profile. 757 821 IPR001005 -
Aev01g1908 856 MobiDBLite consensus disorder prediction 42 59 - -
Aev01g1908 856 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 487 IPR036866 -
Aev01g1908 856 Gene3D - 81 489 IPR036866 -
Aev01g1908 856 CDD RNaseJ_MBL-fold 80 487 - -
Aev01g1908 856 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
Aev01g1908 856 MobiDBLite consensus disorder prediction 729 763 - -
Aev01g1908 856 MobiDBLite consensus disorder prediction 665 698 - -
Aev01g1908 856 Gene3D - 278 424 IPR042173 -
Aev01g1908 856 SMART Lactamase_B_5a 89 286 IPR001279 -
Aev01g1908 856 MobiDBLite consensus disorder prediction 27 59 - -
Aev01g1908 856 CDD GT1 763 828 - -
Aev01g1908 856 Pfam Myb/SANT-like DNA-binding domain 762 846 IPR044822 -
Aev01g1908 856 PANTHER RIBONUCLEASE J 1 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1908 Aev-Chr1 24062707 24069376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1908 764 848 Trihelix Transcription Factor Family AT2G38250 36.782 2.07e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aev01g1908 Lactamase_B 3.6e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1908 - - gmx:100814619 1397.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1908 01 24062707 24069376 Aev01g1908 01 24062707 24069376 ECH
Aev01g1908 01 24062707 24069376 Aev08g2385 08 22907036 22913521 PCT