Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1907 ATGGAAGAAGGAGAGGCTCTGTTAGCATGCAGTGACAAGAGCATCAAAATTGGGGTATCAATGTGGGACACAACAACCGCTCAGAAAATTCTTCACATACCATCATGCGCTTCACCACCTTTTGGGTTGCTGTGCTTGAACAATCGCTTCGTTGTTGCGTCCCAGCTCACTAACAAAAACGCCTCTCTTGGCGGAGGAGCCATTATTATCTGGCCATTGAACAAGCCTCAAAAACCGCTTTTGAATTACACAGTGGAGGCCATTGGGCCACTTTCTTGCACAAAAGACGGCATATATCTCGTAGGAGGAGCCTTGTCTGGAACTGCTTATCTCTGGGATGTGACCAGTGGAAAATTGTTGAAGACTTGGATTGCTCATTATAAATCTCTGAACTGCATGCTCTTTTCAGATGACAATTCTATTCTCATTTCTGGTTCGGATGATGGGATGATCTGTGTTTGGTCCATGATTAGGCTGTTAGATGTGGAAGAGATGGAAAGCTCATTAGATGTGGAAGAGACGAGAAACTCGCCTTTGTTACATTGTTTGTTAGGGCACATGTCCTCTATAACGGGTCTCTTAACTACACCAGGCTGTTACCTCTCATTTTTAGTATCAAGCTCTCTTGATGGCACATGCAAGGTTTGGGACTTTATCTCAGGAAGGCTCATGCAAACTCAAGTCTATCCTTTGGCAATAACTTGCATCGCTCTTCACCAAGGAGAAGGGTGGTTGTTTTGTGGAACAGTAAATGGAACAGTACTTGTTAACAAGCTCGCAATAGGTCTGGAAGAAGGTCCTTCGATTGTCGCAATAGACCAACCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCCTTGACCTCCAGTCAAGCAGGCCTAATATCTACCTCCGAAGACTGCACAATCTGCATTTGGGATGTCTTCAACCAGGTTATCGTTCGAAGGTTCGACCTTCAAAAAGCAGGGAGAGTAACTAATCTGGCTGTAGTTGCATGGTCCTCAATGCTCTCGACCCGTAGGAGAGTCGCGAGTAGCAATGAGTATTCCGTTTCTCCACTTGAGAAATATCCTCAGCCGAACTCATCCAAGGGAACTACCACCCGCATTTCCTTATGTCGCAATTACGAAGATAAGCAAACTGGCATCGGTTTAAGAAGTACTTGTTTATTGAGACAGGGCATGCCTAGTTCACAGAAAGCGTTTACTACGACTAGGGCCATAACAATGCAAATGCAAATGAAAGTGGAAACAGATATACAGAAGCGCGCGAAGGCAACAAAGATGGCAAAGCATGTCATGAAGATAAACAGACAATTGAAGACCCTACTGACGAGCTTGATGCAGGACAGATTATTTATTCCTGATCCTGTCGGAATCAACTCCAAAAAAAATGGTAGAAAAGAGCTCGCGATTCAGAGTTCTGTGCAGGAAGAGGAAAACCAGAACCCATAG 1458 0.4451 MEEGEALLACSDKSIKIGVSMWDTTTAQKILHIPSCASPPFGLLCLNNRFVVASQLTNKNASLGGGAIIIWPLNKPQKPLLNYTVEAIGPLSCTKDGIYLVGGALSGTAYLWDVTSGKLLKTWIAHYKSLNCMLFSDDNSILISGSDDGMICVWSMIRLLDVEEMESSLDVEETRNSPLLHCLLGHMSSITGLLTTPGCYLSFLVSSSLDGTCKVWDFISGRLMQTQVYPLAITCIALHQGEGWLFCGTVNGTVLVNKLAIGLEEGPSIVAIDQPLELKGHNGAITALTSSQAGLISTSEDCTICIWDVFNQVIVRRFDLQKAGRVTNLAVVAWSSMLSTRRRVASSNEYSVSPLEKYPQPNSSKGTTTRISLCRNYEDKQTGIGLRSTCLLRQGMPSSQKAFTTTRAITMQMQMKVETDIQKRAKATKMAKHVMKINRQLKTLLTSLMQDRLFIPDPVGINSKKNGRKELAIQSSVQEEENQNP* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1907 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 309 IPR001680 GO:0005515
Aev01g1907 485 MobiDBLite consensus disorder prediction 468 485 - -
Aev01g1907 485 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Aev01g1907 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 226 IPR001680 GO:0005515
Aev01g1907 485 MobiDBLite consensus disorder prediction 460 485 - -
Aev01g1907 485 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 3 475 - -
Aev01g1907 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 156 IPR001680 GO:0005515
Aev01g1907 485 PANTHER WD-REPEAT PROTEIN 18 3 475 IPR045227 -
Aev01g1907 485 SMART WD40_4 271 308 IPR001680 GO:0005515
Aev01g1907 485 SMART WD40_4 176 217 IPR001680 GO:0005515
Aev01g1907 485 SMART WD40_4 76 113 IPR001680 GO:0005515
Aev01g1907 485 SMART WD40_4 220 258 IPR001680 GO:0005515
Aev01g1907 485 SMART WD40_4 116 155 IPR001680 GO:0005515
Aev01g1907 485 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Aev01g1907 485 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Aev01g1907 485 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Aev01g1907 485 SUPERFAMILY WD40 repeat-like 9 316 IPR036322 GO:0005515
Aev01g1907 485 Gene3D - 230 349 IPR015943 GO:0005515
Aev01g1907 485 Gene3D - 2 229 IPR015943 GO:0005515
Aev01g1907 485 Pfam WD domain, G-beta repeat 179 217 IPR001680 GO:0005515
Aev01g1907 485 Pfam WD domain, G-beta repeat 117 155 IPR001680 GO:0005515
Aev01g1907 485 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Aev01g1907 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1907 Aev-Chr1 24057524 24060406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1907 72 377 U-box Gene Family AT1G04510 23.567 2.73e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1907 K14829 - gmx:102662801 578.17