Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1901 ATGAACAACAATAATAATCCACCAAAGAACGTTGCGGCACCACCGCCGTTTTTTGGAAATTCCGGAAATGCCCCTCACCTCGCCACCACCAATCCACAACCCCACCTTTTGTCACAGGCACAACCACCTCAGACACAAGGTGGTTCTCACTTCCATGGTCATTTTCAGCTCTCACAGCCCCAGACACAGTTGCTACCTAATGCACAACAATCACATTATCCACAGCCTCATCCACATGTGCAACATCACCCTCAACAACCACCACCACCACAACAACAGCAACAGCAACAATCTCGGGAACATCCTGTTAACCAATCCCACGCCAGCGCCAATGTTAGTAGTGCGGCGGCAGGGGCAGCCACTCCTGCCACGGCATCGGCCAAGAGGGCGGGTCAAAGGCCGCCTTCTAGGCCATCCGGTTCGTCGAACACTAGCCAGGCGTCGGCCTTCAAGACCATGGAATTGGCCCCTGCTCCTCTAAGGCGGAAGAGGAGCTTGCCGGAGAAGGAGAAAAGGATACCAGAGAAGGTGGCTGCAGTTCTGCCTGAATCTGCTATTTACACTCAGTTGCTTGAGCTTGAGGCCCAAGTTGATGCTGCTTTGGCTAGGAAGAAGATTGATATACAGGGAGCGGTGAGAACCCCTCGATGTGTTCAGAAGACTCTACGTGTTTATGTGTACAATACCTTTTCAAATCAGAACAGGATGGATTCCGAGAAGAAGATTGGGGAGGATCCTTCTTGGTCCCTCAGGGTAACTGGAAGGATATTGGAAGACGGCAAGGATCCTGTGGTAGCAGGGACTTCGCTGGGATTGAACCCTTCGTACCCAAAGTTTTCAACTTTCTTCAAGAAGATTACCATTTACTTAGATCAGGGGTTCTATCCTGATAATCATGTCATTGTTTGGGATTCGGCTCGTTCATCTGCTCAGCAGGACGGCTTTGAGGTGAAGAGGATAGGAGATAAGGAGTTCACTGTGGTGATCAGACTAACAATGAATTACATACCTGAGAAGTTTATGGTTTCAACTCCGCTGTCTAAAGTTTTAGGGATTGAGTTTGATACTCGCCCAAGAATAATAGCTGCTCTTTGGCACTATGTTAAGTCTAGGAAGCTGCAGAGCCCCAATGACCCTTCATTCTTCATGTGTGATCCTTCTCTCCAGAAGGTTTTTGGGGAAGAGAAAATGAAATTCTCTGTGGCTTCGCAGAAGATATCACAGCATTTATCACAACCACAGCCTATACACCTGGAGCATAAGATCAAGCTTTCTGGGAATTCTCCAGCTGGAACTACATGTTATGATGTGCAGGTTGATTTGCCTCTTCCTCTGGAGAAGGATATGTCTGCATTTTTGGCAAGCATTGAGAGGCACAAGGAGATCAATGTTTTCGATGAAGTGATTTGCAATTCTATAAAGAAGATCCATGAGCATCGCAGGAGACGGGCCTTCTTTCTTGGCTTTAGTCAGTCTCCAGCAGAGTTTATTAATGCTTTGATTGCTTCTCAGAGCAAGGATCTAAAGCTTGTCGCTGGAGATGCTAGCCAAGATGCAGAGAAGGAACGGCGTTCTGAATTCTACAAACAACCATGGGTTGAGGATGCTGTTATTCGATACCTGAACCGGAAAACTGCTCGAAGTGATGCTCCCGGAAGCACCTAA 1665 0.4769 MNNNNNPPKNVAAPPPFFGNSGNAPHLATTNPQPHLLSQAQPPQTQGGSHFHGHFQLSQPQTQLLPNAQQSHYPQPHPHVQHHPQQPPPPQQQQQQQSREHPVNQSHASANVSSAAAGAATPATASAKRAGQRPPSRPSGSSNTSQASAFKTMELAPAPLRRKRSLPEKEKRIPEKVAAVLPESAIYTQLLELEAQVDAALARKKIDIQGAVRTPRCVQKTLRVYVYNTFSNQNRMDSEKKIGEDPSWSLRVTGRILEDGKDPVVAGTSLGLNPSYPKFSTFFKKITIYLDQGFYPDNHVIVWDSARSSAQQDGFEVKRIGDKEFTVVIRLTMNYIPEKFMVSTPLSKVLGIEFDTRPRIIAALWHYVKSRKLQSPNDPSFFMCDPSLQKVFGEEKMKFSVASQKISQHLSQPQPIHLEHKIKLSGNSPAGTTCYDVQVDLPLPLEKDMSAFLASIERHKEINVFDEVICNSIKKIHEHRRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDASQDAEKERRSEFYKQPWVEDAVIRYLNRKTARSDAPGST* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1901 554 MobiDBLite consensus disorder prediction 157 171 - -
Aev01g1901 554 MobiDBLite consensus disorder prediction 92 120 - -
Aev01g1901 554 SUPERFAMILY SWIB/MDM2 domain 330 420 IPR036885 -
Aev01g1901 554 MobiDBLite consensus disorder prediction 1 171 - -
Aev01g1901 554 SMART swib_2 336 415 IPR019835 -
Aev01g1901 554 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 110 551 - -
Aev01g1901 554 MobiDBLite consensus disorder prediction 23 76 - -
Aev01g1901 554 MobiDBLite consensus disorder prediction 135 151 - -
Aev01g1901 554 CDD SWIB_like 342 410 - -
Aev01g1901 554 Pfam SWIB/MDM2 domain 339 410 IPR003121 -
Aev01g1901 554 ProSiteProfiles SWIB/MDM2 domain profile. 335 412 IPR003121 -
Aev01g1901 554 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 110 551 - -
Aev01g1901 554 Gene3D SWIB/MDM2 domain 332 417 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1901 Aev-Chr1 24010695 24012684 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aev01g1901 SWIB 4.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1901 K11650 - gmx:100817271 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1901 01 24010695 24012684 Aev01g1901 01 24010695 24012684 ECH
Aev01g1901 01 24010695 24012684 Aev08g2389 08 22938385 22945053 PCT