Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1887 ATGTCGACGACACTCTCATCGAACCGCTCCACGGAGGACGTGGTGGATCCGATGCCGCTCATCTCGAATTCCGGCGGCTCCTCCGATGGATCGAGCTCCGGCCGGAGATTCGTCCGGCGTCAGAGTCTCCGACAGGCGGCGAGGTTCCTCCGGCAGGCTAGCGGGCGGGGGACGTTGCGTGAGCCGTCGATGGTGGTGAGGGAAACGGCGGCGGAGCAGCTGGAGGAGAGGCAGAGCGATTGGGCGTACTCGAAGCCGGTGGTGGTTCTCGACATCCTGTGGAACTTCGCGTTCGTGGTGGCCGGCGCCGCCGTGCTGATTCTTAGCCGCAAGGAGTCTCCGAGCACGCCGCTGAGGCTGTGGATCTTAGGGTACGGTCTTCAGTGCGTTGTACACGTGGCGTGCGTGTGCGTGGAGTATCAGAGGAGGAGGCGGAGGAGGAGGGAACAGCTGATTGCAAACGACGCCGTTCGAAACGATGCGGTTGGAAGTGGCGGAAGCGGGGATTTGAGTTCGGGTTCTATGGATGGTTCTGGACAGTATGTGGCATTTGCGCAATTCGAAGAGGACGGTACTAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCATTTATTTGGTGGGTTGTTGGATTCTATTGGGTATCAGCTACAGGTCAAACTTTGGCCCAAGAGGCTCCTCTACTTTATTGGTTATGTATAGTCTTCTTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCTCTGGCATGCATCATCGGTATTGCTGTTTGCTGCTGTCTTCCGTGTATCATTGCACTTCTTTACGCAGTTGCAGACCAGGCAAGGGCATCAAAAGAAGACATCGAGCAGTTGTCAAAGTTCAAATTCCAAAGAACTGAAAATAATGAGAAAGCTGGCGATACACAAGGATCTGCCGGAGGAATAATGACAGAATGCCAGGCTGATTCACCTATCGAACGCACCCTATCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCATATGATGATGGGGTCGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTACCTGTGTGGACAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAGTATAACATCTTGAAAAGTACCAGCTGCGGTGACGAGGAAGTATAG 1167 0.5244 MSTTLSSNRSTEDVVDPMPLISNSGGSSDGSSSGRRFVRRQSLRQAARFLRQASGRGTLREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNFAFVVAGAAVLILSRKESPSTPLRLWILGYGLQCVVHVACVCVEYQRRRRRRREQLIANDAVRNDAVGSGGSGDLSSGSMDGSGQYVAFAQFEEDGTSMAKHLESANTMFSFIWWVVGFYWVSATGQTLAQEAPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQARASKEDIEQLSKFKFQRTENNEKAGDTQGSAGGIMTECQADSPIERTLSDEDAECCICLSAYDDGVELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSTSCGDEEV* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1887 388 PANTHER TARGET OF ERK KINASE MPK-1 3 388 - -
Aev01g1887 388 SMART ring_2 333 373 IPR001841 -
Aev01g1887 388 Pfam Ring finger domain 332 374 IPR001841 -
Aev01g1887 388 MobiDBLite consensus disorder prediction 1 37 - -
Aev01g1887 388 CDD RING-H2_RNF111_like 332 376 - -
Aev01g1887 388 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 388 - -
Aev01g1887 388 MobiDBLite consensus disorder prediction 21 37 - -
Aev01g1887 388 SUPERFAMILY RING/U-box 324 380 - -
Aev01g1887 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Aev01g1887 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 382 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1887 Aev-Chr1 23854400 23858963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1887 23 379 C3H Transcription Factor Family AT1G68070 50.000 4.50e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1887 - - ahf:112722254 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1887 01 23854400 23858963 Aev05g0954 05 6737057 6740165 PCT