Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1876 ATGGCTTCTTCTTCTTCTTCAAAGAGGCACCCATTGTACCACGGCATCAGATGTCGTGGAGGCAAATGGGTGTCTGAGATCCGGGAGCCACGGAAGACGTCCCGGATATGGCTTGGCACATTCTTGACGCCAGAGATGGCGGCCGCCGCCTATGATGTGGCGGCACTGGCACTCAAGGGTGATGACGCCACCCTGAACTTTCCTGCTATGGCAGGAAAGTACCCGGTGCCGGCCTCCAATTCACCGGCTGACATTCGCAGTGCTGCCACGGCAGCAGCACAACTCATGAATGAAGAATCCTACAATAATAATAGCAATGATGGCGGTGGTGGTGCTAACACTAGCACTACTAGTGGTTTGATGCCGGAAACAGAGTTTTTGGATGAAGAAGCCATTTTCTCGATGCCGAGTTTGCTGGTGGACATGGCTGAGGGAATGCTGCTGTCACCGCCTATATTGAGCCCGCCATCTTACGACTCGCCTGAAAATTATACTGGTGGAGGAGAAAGTTTGTGGAACTATTAA 525 0.5219 MASSSSSKRHPLYHGIRCRGGKWVSEIREPRKTSRIWLGTFLTPEMAAAAYDVAALALKGDDATLNFPAMAGKYPVPASNSPADIRSAATAAAQLMNEESYNNNSNDGGGGANTSTTSGLMPETEFLDEEAIFSMPSLLVDMAEGMLLSPPILSPPSYDSPENYTGGGESLWNY* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1876 174 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Aev01g1876 174 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Aev01g1876 174 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Aev01g1876 174 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Aev01g1876 174 MobiDBLite consensus disorder prediction 158 174 - -
Aev01g1876 174 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Aev01g1876 174 MobiDBLite consensus disorder prediction 154 174 - -
Aev01g1876 174 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Aev01g1876 174 PANTHER ETHYLENE RESPONSE FACTOR 1 174 - -
Aev01g1876 174 MobiDBLite consensus disorder prediction 100 120 - -
Aev01g1876 174 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1876 Aev-Chr1 23733511 23734035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1876 7 174 AP2-EREBP Transcription Factor Family AT5G52020 53.143 6.78e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aev01g1876 AP2 2.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1876 - - gmx:100778793 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1876 01 23733511 23734035 Aev05g0944 05 6653850 6654455 PCT