Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1808 ATGGAGCTTCCTCCAAATCAAGGTCATCCTCATCCTCATCCTCATCAAGAAGGGTCTTCTTCCTCTCATCATCAAAAGAAAATGGGAAGAGGGAAAATAGAGATAAAGAGGATTGAGAACACAACAAATAGGCAAGTGACATTTTGCAAAAGGCGCAATGGTTTGTTGAAGAAAGCCTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGTCGCTTGTATGAGTATGCCAATAACAGTGTGAGAGCAACAATTGATAGGTACAAAAAAGCATGTTCTGCTACCACAAACGCAGAATCCGTGTCTGAAGCTAATACTCAGTTTTACCAGCAAGAATCAACCAAATTGAAAAGACAAATCCGAGAGATCCAAAATCTGAACAAGCACATCCTTGGTGAAGCACTCAGCTCTCTAAGCCTCAAGGAACTCAAGAACCTTGAGAGTAGGTTGGAGAAAGGTTTGAGCAGAGTTAGATCTAGAAAGCATGAAACTTTGTTTGCTGATGTGGAGTTCATGCAAAAACGGGAAATTGAGCTGCAAAACCACAACAATTTTCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAGCAGCAGCAACAACAACAGCAACAGAATTTGATGCCAACTGGAACACTGTGCGACACAATGCCATCACAATCATATGATCGCAACTTCTTTCCGGTCAATCTCCTCGCTTCTGATCACCAATACTCGCGCGACGATCAGACTGCTCTCCAACTTGTCTGA 777 0.4273 MELPPNQGHPHPHPHQEGSSSSHHQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIDRYKKACSATTNAESVSEANTQFYQQESTKLKRQIREIQNLNKHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNFLRAKIAEHERAQQQQQQQQQQNLMPTGTLCDTMPSQSYDRNFFPVNLLASDHQYSRDDQTALQLV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1808 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 84 IPR002100 GO:0003677|GO:0046983
Aev01g1808 258 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Aev01g1808 258 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Aev01g1808 258 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Aev01g1808 258 Pfam K-box region 112 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev01g1808 258 Gene3D - 40 111 IPR036879 GO:0003677|GO:0046983
Aev01g1808 258 MobiDBLite consensus disorder prediction 201 224 - -
Aev01g1808 258 CDD MADS_MEF2_like 29 102 IPR033896 GO:0000977|GO:0045944
Aev01g1808 258 Coils Coil 191 216 - -
Aev01g1808 258 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 21 247 - -
Aev01g1808 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 247 - -
Aev01g1808 258 ProSitePatterns MADS-box domain signature. 30 84 IPR002100 GO:0003677|GO:0046983
Aev01g1808 258 MobiDBLite consensus disorder prediction 203 224 - -
Aev01g1808 258 Coils Coil 148 168 - -
Aev01g1808 258 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev01g1808 258 MobiDBLite consensus disorder prediction 16 34 - -
Aev01g1808 258 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Aev01g1808 258 SUPERFAMILY SRF-like 29 105 IPR036879 GO:0003677|GO:0046983
Aev01g1808 258 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Aev01g1808 258 MobiDBLite consensus disorder prediction 1 34 - -
Aev01g1808 258 Coils Coil 114 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1808 Aev-Chr1 23093927 23103861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1808 16 258 MADS-box Gene Family AT3G58780 66.397 1.10e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev01g1808 K-box 4.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1808 K09264 - gmx:100808734 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1808 01 23093927 23103861 Aev07g0291 07 1664946 1668826 PCT