Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1801 ATGGAGAAGCATTCTTGGGATTCTTTGTCTGCTGTTGGTGCTGCAGGCCCATCTGAGAATACTTTCTCACTCAATATTCCGAAAAAGACGGGGAGCAGTGCATGGGGAATACCACACAAAAGTGACATATTTCATGCTTCAAGTGATGTTAGCTTGTTTTCCAGTTCACTACCTGTTCTTCCGCATGAAAAGTTAAATTTGACTGATTCTGAACGTTGTGGTCAACCTGTTGATGATAACTTCCTAACACTGGATAAAGTTGACAAAGAGGATGAGGGAAATGATCCTTTTGAAGATTTTGAAGCCAGTGCAATTGGAAACATACTTCCTGATGATGAAGAGGATCTTTTAGCTGGGATAATGGATGACTTTGACCTCAGTAAGCTGCCAAGCCAACTGGAGGATTTGGATGATAATGATCTGTTTGGCAGTGGAGGGGGGTTTGAAATGGATTTTGAACCACCGGACAGTCTTAGTGTTGGTATGTCAAAGATAAGCTTATCAGATGGAGTTGCTTCGAATGGTATTGGTCATTATGCTATCCAAAATGGTGTGGGAACAGTGGCTGGTGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTCGAGGACTCTGAATTGCGGACTCTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCATACTATGACATTCGAGCTGCTCGCACTGCAATGCGGGCTTTACAGAACAAGCCTTTGAGACGGAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCGTCAGAGAAAGATATTAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGAAGACCTGCGTCAAATTTTCGGGGCTTATGGAGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGGCACCATAAATTTATTGAATATTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAGGCATTAAATCGAAGTGATATTGCTGGAAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAGCTGGATCTAGATGAAGCTCGAACTTATAGACATCAAGTAGGTTCGCCTGTGGCCATTTCTCCACCTGGTAACTGGGCACATTATGGTAGTCCAGTTGAGCATAATCCATTAGGTTCTTATAGCAAGTCCCCTGGTTTGGGTCATGCCAGCCCTGTGAACACCAATCATTTGCCTGGGTTGGCTGCAATTCTCTCCCCGCATTCATCAACCTCGGCCAAGATTGCACCGATTGGGAAGGACCATGGAAGGGCTGCAAATCATATATTTTCAAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCCATGTCCTTTCCTGAGCAAAAAGTGAATGCAAGTCCTAGGCCTATATCTAGTTTTGGTGAATCAAGCTCAAGTTCATCAAGTATTGGAACTCTGTCTGGCCCTCAATTTCTTTGGGGGAGCCCAACTCCTTACTCGGAGAATTCAAACACATCTGCCTGGTCTTCGTCATCTTTGGGGCTTCCGTTTACATCTAGTAGCCAAAGGCAGGGTTTCCCACATACTAGTCATCGCAGTTCTTTTATTGGATCGCATTCGCAGCCCCATCATCATATAGGATCTGCCCCATCTGGCCTTCCTTTTGATAGGAATTTTAACTACTTCCCAGAGTCACCTGATGCTTCTCTCATGAGCCCGGTTGGATTTGGTAATTTGAATCACAGTGACAGGAGTTTTATGATGAACATGGGTGCTCGTACATCTGTAGGACTTGGTGCTGGCCTTTCTGGAAATACCGTTGAAATTGGTTCACCTAATTTCAGAATGATGTCGCTGCCTAGGCATGGTTCGTTGTTCCTTGGAAGCAGTTCATATTCTGGACCAGGAGCAATTAACACTGAGGGATTAGCTGAACGTGGTCGAAGTAGGCGTCCCGACAACAACATTAACCAAGTTGATAGCAAGAAGCTGTACCAACTTGATCTCGACAAAATCATCGCCGGCGAAGATACCAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACATCAAAGATGCTCCTTGCTGCAATTGACGAGAATCACCGCGGTACCTATGACTTTATCTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGATATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTACAAGGCATTTAATGGAAAGAAGTGGGAAAAGTTTAACAGCGAAAAAGTTGCGTCACTGGCATATGCACGAATACAAGGAAAGGCTGCACTCGTGACCCATTTTCAGAATTCAAGCTTAATGAATGAGGACAAGCGGTGCCGGCCAATCCTCTTTCATTCGGAGGGCCAAGAGACTGGAGATCAGGAGCATTTTCTATCCAGCAATTTGAACATATGCATTCGCCAGCCGGATGGATCTTACTCGGGCGACTTGTTGGAGAGCCCGAAGGGCAACAACTCGGACGAGAATCTAGAAAAAGATTAA 2583 0.439 MEKHSWDSLSAVGAAGPSENTFSLNIPKKTGSSAWGIPHKSDIFHASSDVSLFSSSLPVLPHEKLNLTDSERCGQPVDDNFLTLDKVDKEDEGNDPFEDFEASAIGNILPDDEEDLLAGIMDDFDLSKLPSQLEDLDDNDLFGSGGGFEMDFEPPDSLSVGMSKISLSDGVASNGIGHYAIQNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELDLDEARTYRHQVGSPVAISPPGNWAHYGSPVEHNPLGSYSKSPGLGHASPVNTNHLPGLAAILSPHSSTSAKIAPIGKDHGRAANHIFSNSGSTQGAAFQHSMSFPEQKVNASPRPISSFGESSSSSSSIGTLSGPQFLWGSPTPYSENSNTSAWSSSSLGLPFTSSSQRQGFPHTSHRSSFIGSHSQPHHHIGSAPSGLPFDRNFNYFPESPDASLMSPVGFGNLNHSDRSFMMNMGARTSVGLGAGLSGNTVEIGSPNFRMMSLPRHGSLFLGSSSYSGPGAINTEGLAERGRSRRPDNNINQVDSKKLYQLDLDKIIAGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFIYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNNSDENLEKD* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1801 860 CDD RRM3_MEI2_like 702 787 IPR034454 -
Aev01g1801 860 Pfam RNA recognition motif 2 699 795 IPR007201 -
Aev01g1801 860 SUPERFAMILY RNA-binding domain, RBD 197 359 IPR035979 GO:0003676
Aev01g1801 860 Gene3D - 188 283 IPR012677 -
Aev01g1801 860 CDD RRM1_MEI2_like 199 275 IPR034453 -
Aev01g1801 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 358 IPR000504 GO:0003723
Aev01g1801 860 SUPERFAMILY RNA-binding domain, RBD 701 786 IPR035979 GO:0003676
Aev01g1801 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Aev01g1801 860 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 857 - -
Aev01g1801 860 MobiDBLite consensus disorder prediction 479 502 - -
Aev01g1801 860 SMART rrm1_1 701 777 IPR000504 GO:0003723
Aev01g1801 860 SMART rrm1_1 286 354 IPR000504 GO:0003723
Aev01g1801 860 SMART rrm1_1 201 269 IPR000504 GO:0003723
Aev01g1801 860 MobiDBLite consensus disorder prediction 1 27 - -
Aev01g1801 860 PANTHER PROTEIN MEI2-LIKE 2 15 857 - -
Aev01g1801 860 MobiDBLite consensus disorder prediction 840 860 - -
Aev01g1801 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 352 IPR000504 GO:0003723
Aev01g1801 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 266 IPR000504 GO:0003723
Aev01g1801 860 MobiDBLite consensus disorder prediction 539 565 - -
Aev01g1801 860 CDD RRM2_MEI2_like 284 354 - -
Aev01g1801 860 Gene3D - 284 380 IPR012677 -
Aev01g1801 860 MobiDBLite consensus disorder prediction 539 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1801 Aev-Chr1 23018642 23023866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1801 195 371 Eukaryotic Initiation Factors Gene Family AT3G16380 25.253 1.10e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1801 - - gmx:100812324 1434.47