Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1500 ATGGGAAAGTGCTCTTTTCAGGATTCCCTGAAAGCTCTTGAAGCTGATATTCAGTATGCTAATACCCTGGCGTTAAGTTATCCAAGGGAAAAAGATGGAGGATGCTATCAGATGAGACTATCATACAGTCCAGCAGCACCCATATTTCTCTTTCTTGTTCAGTGGGCAGATTATCGCCTTGCTGGTGCTCTTGGTTTGCTGAGAATTCTTGTTTATGTGAATTATGGAGATGGGAAGAATACTGTGTCAATATATGAAAGGAAAGCAACCATTAGACAATTTTACACTGTGATATTTCCTGCTCTATTGCAACTTCAGAAAGGAGTCACAGATTTGGAGCTAAGAAAACAGAAAGAATTGTATTTGCAAAGATACCAAAGGAAGACTGAAGAGTTTGAAAACAGAGGAGAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTGGAAGTGAAAGGGAAAGTTGTGCTGCCTAATTGCTGCCATGAAATGTGTTTGAAGTGCTATAGAGATTGGTTTGTGAGGTCTCAGTCTTGCCCCTTTTGCCGCGATAGCCTGGCAAGAATGAACTCAGGGGACCTTTGGATTTACACAGACAGTAGTGACATTGTTGATGTTGGTACAATTTTCAAAGAAAATTGCAAGATGCTGTTTCTGTATATGGAGAAGTTGCCTCTTGTGGTTCCAGACCCAAGACATGTATCTTATGATCCATTTTTAATAAGGTGA 738 0.3997 MGKCSFQDSLKALEADIQYANTLALSYPREKDGGCYQMRLSYSPAAPIFLFLVQWADYRLAGALGLLRILVYVNYGDGKNTVSIYERKATIRQFYTVIFPALLQLQKGVTDLELRKQKELYLQRYQRKTEEFENRGESEIDIEREEECGVCLEVKGKVVLPNCCHEMCLKCYRDWFVRSQSCPFCRDSLARMNSGDLWIYTDSSDIVDVGTIFKENCKMLFLYMEKLPLVVPDPRHVSYDPFLIR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1500 245 PANTHER RING FINGER PROTEIN 41, 151 1 243 - -
Aev01g1500 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 195 IPR013083 -
Aev01g1500 245 SMART ring_2 148 185 IPR001841 -
Aev01g1500 245 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Aev01g1500 245 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Aev01g1500 245 Pfam Zinc finger, C3HC4 type (RING finger) 145 189 - -
Aev01g1500 245 SUPERFAMILY RING/U-box 135 190 - -
Aev01g1500 245 Coils Coil 115 135 - -
Aev01g1500 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1500 Aev-Chr1 17852267 17855558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1500 104 204 C3H Transcription Factor Family AT5G01960 28.713 3.49e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1500 - - gmx:100808567 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1500 01 17852267 17855558 Aev01g1500 01 17852267 17855558 ECH