Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1439 ATGGATGAAGGTGAGGGAGGGTACGGCGAGAGCGGCGATCCTATGGATCATTTCCACCGTAACGAAGCTATATCCGCCGTCGCCGACGAGGGTTTCTTGGGCGAGGAAGAAGACGATGACTACGAAGACCTGTACAACGACGTCAATGTTGGAGAGGGCTTCCTCCAATCACTTCGCAAAAACGACGATCCGGGGTTCCGAAACGATGTCTCAGTTCAGGACAACAAGAAGCCACAGCAAGACGCGCCTGGAGTCTCGGTACCCGGTGTCGGCGGCGAGGGTACTGTTGGTGGTGGGGTTGTGGATGGGGGTTCTAGGGCTTCAGGGTTTCAGAATCAGGGGTTTAGAGGGAACGATTTGGGTGCTAAAGGGGGTGCTGGATCTGGAATTAGGGTAGAGTTGGGGCAGCCATCTGGGAAGATGAGTGGGATTGGGGAGCAGAGTGGCAATGATGGTGTTGCCGTGCAGGGGATTGTGCAGCAGCAGCAGCCTCATGGTGGGGCTATTGGCTCTGTTGGGAATGAGGGTATGGTGAGGCAAGGTGGTCCTGTTGGTGGAGTTGGAGTTGGAGATGTCAATAGGGTTGGTGGGAATGGTGTTGGGAACAGTGTGAGTGCTGTTACTAGTGTTAACACCGTGGGAACTGGTGCTGGAGCTGCGGTGGGTGGTGGTGGTGGTGCACCTGGTGGGGGTACCATATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAGGCTGAGCTTTGCAAGTATGGGCCTGTGAAGGAGGTTAAGTTTTTTGATGAGAAGGCGAGTGGGAAATCCAAAGGGTATTGCCAGGTTGAGTTTTTAGATCCTTCTGCTGCCACTGCCTGTAAGGAAGGGATGAATGGGCATATGTTTAATGGCAGGCCGTGTGTTGTTGCATATGCGTCGCCTTTTACTGTTAAAAAAATGGGAGAGGCTCAGGTGAATAGGAATCAGCAGATGACTCAATCTGCAGCACCACAGGGAAGGAGGGGGCCTGCTGATGCAGGGGCTAAGCCTGGTGGGAGTAATATTGCGACTGGCGGTAACTACCAAGGTGGAGATGGGAATAGAGGATATGGGAGAGGTAATTGGGGCAGAGGAAATAATCCTGGGATGGGTAATAGAGGGCCGGTTAATCCTATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTTTAATGGGAAATGGTGGGAATGGATTTGGACAGGGTATGGGTGCTACTCCACCTATGATGCATCCTCAGTCGATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGTGCTCCAACACCTCCATTCTCTGGCATTTTGCCATCATTCCCTGGTGTTGGAGGTGTTGGCTTGCCAGGAGTAGCACCTCACGTTAATCCAGCCTTTTTCGGAAGAGGTATGCCTATGAATGGTATGGGGATGATGCCTGGATCTGGCATGGATGGGCCTAATATGGGAATATGGTCAGATCCGAATATGGGTGGATGGGGTGGCGAAGAGCATGGTGGTGGCAGGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCGTCTGACCATCAGTATGGTGAGGCAAGTCATGATAGAAGTGGTTGGCCTAATGCTATGAGGGAAAAAGATAGAGGATCGGAAAGGGACTGGTCTGGTTCATCTGAGCGAAGGTACAAGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAAAAAGATATGGGTCATGATCATGAATTGTCAGAAAGAAGGCATCGTGATGACAGAGAAATTGGTCGAGAACGGTCTCGAGACCGTGAACGTTCTCGAGACCATGACCGTGACCATGACCGAGAAAGGGATCGTGAACGTGGTCGTGAGCGTGAAAGGTACAGGGAAGATAGGGACAAATATATAGATCATCATAGGTACAGAGACCGTGAAGCAGATCATGATGAGGAATGGGAAAGGGGACGGTCATCTAGGACTCATAGCAAGTCAAGATTATCACAAGAGGAGGAGCACCATCCTAGGTCCAGAGATGCTGATTATGGGAAGAGAAGGCGGATGACCTCTGAGTAA 2109 0.5135 MDEGEGGYGESGDPMDHFHRNEAISAVADEGFLGEEEDDDYEDLYNDVNVGEGFLQSLRKNDDPGFRNDVSVQDNKKPQQDAPGVSVPGVGGEGTVGGGVVDGGSRASGFQNQGFRGNDLGAKGGAGSGIRVELGQPSGKMSGIGEQSGNDGVAVQGIVQQQQPHGGAIGSVGNEGMVRQGGPVGGVGVGDVNRVGGNGVGNSVSAVTSVNTVGTGAGAAVGGGGGAPGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFLDPSAATACKEGMNGHMFNGRPCVVAYASPFTVKKMGEAQVNRNQQMTQSAAPQGRRGPADAGAKPGGSNIATGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGLMGNGGNGFGQGMGATPPMMHPQSMMNQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPGSGMDGPNMGIWSDPNMGGWGGEEHGGGRAGESSYGEEAASDHQYGEASHDRSGWPNAMREKDRGSERDWSGSSERRYKDDRDQGYERDAPREKDMGHDHELSERRHRDDREIGRERSRDRERSRDHDRDHDRERDRERGRERERYREDRDKYIDHHRYRDREADHDEEWERGRSSRTHSKSRLSQEEEHHPRSRDADYGKRRRMTSE* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1439 702 CDD RRM_CFIm68_CFIm59 234 307 - -
Aev01g1439 702 MobiDBLite consensus disorder prediction 500 702 - -
Aev01g1439 702 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 701 IPR034772 -
Aev01g1439 702 MobiDBLite consensus disorder prediction 323 389 - -
Aev01g1439 702 SMART rrm1_1 233 306 IPR000504 GO:0003723
Aev01g1439 702 Gene3D - 229 370 IPR012677 -
Aev01g1439 702 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 701 - -
Aev01g1439 702 MobiDBLite consensus disorder prediction 55 91 - -
Aev01g1439 702 MobiDBLite consensus disorder prediction 1 21 - -
Aev01g1439 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Aev01g1439 702 SUPERFAMILY RNA-binding domain, RBD 230 323 IPR035979 GO:0003676
Aev01g1439 702 MobiDBLite consensus disorder prediction 537 702 - -
Aev01g1439 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 303 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1439 Aev-Chr1 16978711 16980819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1439 215 308 Eukaryotic Initiation Factors Gene Family AT4G34110 31.915 1.22e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1439 K14398 - gmx:100782869 856.67