Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev01g1433 | ATGGTGAATCCAATTATCGAAGTGGAGTTCAAATGCCCATTTTGCCAAAGCGGGTTTGTTGAAGAAATAAGTAGCACCACAGCCGGGAACAACATGCGGGAAGTCGAGTTCGGTTCCGACAGGACTCTTTCCCTTTGGGCGCCTATCTTGCTTGGCATGATGAGCAATCCACATCATCGAAGAAGGCCTAGGCGAATAAACCTTGATGATGATGATGATGATGATGATGGCCGTTATGATCGTAATGTTACTGGTAATAGTAATGGTATAGCACGCCCATATGATCGGGAGTTCGAGTCTATGCTCCGGAGGAGAAGGAGAAGCACGGCTACCATTCTTCAATTGCTCCAAGGCATTAGACCTGGACTGACATCTGAATCGAATGAGAATACTGACAGTGATAGCCTTGACAGGGAAAGGGAAAGACAGAGAGAGCGTATAATCTCGATAAATCCTTTTAATCAGACTATAATGTTTCAAGGTTCCTATGACTGGAACCATGGTCATGGTGACAATCATATCCCAAATGGGTCTCTTGGTGACTATTTCATGGGGCCTGGTTTGGATCTACTGTTGCAACATTTGGCTGAGAATGATATCAATAGGTATGGAACCCCACCTGCAGAGAAGGAGGTCATTGAGGCGCTGCCTACTGTGACGATCAACGATAATCTACAGTGTTCTGTGTGTCTGGATGATTTTGAAATTGGTTCTGAGGCTAAAGAGATGCCTTGTAAACATAGTTTTCATACTAGATGCATCTTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCGGTTTGCAGGTATCAATTGCCTGGGGATGAATCTAAGCAAGATTCTGATGCGTCGAGGAATAGTAGTAACCAACGGGAGGATGAAAATTCCAGAAGTGATGACATTGCTGAAGGACAAAGTGAAGCGAGAAATGCAAGTGGGGATAGACGGTTCTCATTTCCATGGCCTTTCAATGGATTGTTTTCTTCTTATAACTCTTTATCATCATCATCATCGGGTAATAATGCAAATGGAGATGTTACTCGATCAGAAAACAACTGA | 1056 | 0.4384 | MVNPIIEVEFKCPFCQSGFVEEISSTTAGNNMREVEFGSDRTLSLWAPILLGMMSNPHHRRRPRRINLDDDDDDDDGRYDRNVTGNSNGIARPYDREFESMLRRRRRSTATILQLLQGIRPGLTSESNENTDSDSLDRERERQRERIISINPFNQTIMFQGSYDWNHGHGDNHIPNGSLGDYFMGPGLDLLLQHLAENDINRYGTPPAEKEVIEALPTVTINDNLQCSVCLDDFEIGSEAKEMPCKHSFHTRCILPWLELHSSCPVCRYQLPGDESKQDSDASRNSSNQREDENSRSDDIAEGQSEARNASGDRRFSFPWPFNGLFSSYNSLSSSSSGNNANGDVTRSENN* | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev01g1433 | 351 | MobiDBLite | consensus disorder prediction | 273 | 316 | - | - | |
| Aev01g1433 | 351 | MobiDBLite | consensus disorder prediction | 274 | 303 | - | - | |
| Aev01g1433 | 351 | Pfam | Ring finger domain | 226 | 268 | IPR001841 | - | |
| Aev01g1433 | 351 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 274 | IPR013083 | - | |
| Aev01g1433 | 351 | MobiDBLite | consensus disorder prediction | 118 | 141 | - | - | |
| Aev01g1433 | 351 | CDD | RING-H2_RNF126_like | 226 | 268 | - | - | |
| Aev01g1433 | 351 | MobiDBLite | consensus disorder prediction | 329 | 351 | - | - | |
| Aev01g1433 | 351 | MobiDBLite | consensus disorder prediction | 57 | 92 | - | - | |
| Aev01g1433 | 351 | ProSiteProfiles | Zinc finger RING-type profile. | 227 | 268 | IPR001841 | - | |
| Aev01g1433 | 351 | SMART | ring_2 | 227 | 267 | IPR001841 | - | |
| Aev01g1433 | 351 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 326 | - | - | |
| Aev01g1433 | 351 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 326 | - | - | |
| Aev01g1433 | 351 | SUPERFAMILY | RING/U-box | 215 | 273 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev01g1433 | Aev-Chr1 | 16891522 | 16892577 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev01g1433 | 113 | 274 | C3H Transcription Factor Family | AT1G26800 | 35.976 | 9.93e-25 | 98.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev01g1433 | K11982 | - | gmx:100784876 | 395.201 |