Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1321 ATGGCAAGAAAGAAGGTGAAGCTTGCAATCATTCTCAATGCTAAGCAAAGGAAATCATCCTACAAGAAAAGGAAGGAAGGCATAATGAAGAAAATTCGGGAGCTCTGCACCCTTTGTGGGGTTGATGCATGTATTATAATCTACAGCGACTTTGATCATCAACAACCACAGATTTGGCCATCATCCCCAATGGTTGCTAAAAGGGTGATCGCGAAGTTCAAGACATATCCTCGAGCAGAGCAGTGCAGGAAGATGGTCAACCAAGAGGCCTACATAAAGGAAATGGTTCGTAAGGCCACAGAGAAGTTGGAGAAGTTGAGGGAGGAGAATAGGAAGAAGGAGATGTCCCTACTAATGTACCAATATCTTACCGGAGGTAAGATATTGGACAACCTAAGTATGGTTGATCTCAATGATCTAGTATGGGTGATTGGTGTGAAGCAAAATGAAATCGACTACAGGTTGAATGCACTTCACAAGAGCATGGCTTCAACAAGCTAA 501 0.4291 MARKKVKLAIILNAKQRKSSYKKRKEGIMKKIRELCTLCGVDACIIIYSDFDHQQPQIWPSSPMVAKRVIAKFKTYPRAEQCRKMVNQEAYIKEMVRKATEKLEKLREENRKKEMSLLMYQYLTGGKILDNLSMVDLNDLVWVIGVKQNEIDYRLNALHKSMASTS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1321 166 CDD MADS_SRF_like 2 87 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev01g1321 166 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Aev01g1321 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Aev01g1321 166 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Aev01g1321 166 Gene3D - 14 122 IPR036879 GO:0003677|GO:0046983
Aev01g1321 166 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev01g1321 166 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev01g1321 166 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev01g1321 166 Coils Coil 89 116 - -
Aev01g1321 166 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 162 - -
Aev01g1321 166 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Aev01g1321 166 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1321 Aev-Chr1 14975003 14975503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1321 1 161 Type I MADS-box Gene Family AT5G48670 45.963 3.32e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev01g1321 SRF-TF 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1321 - - gmx:100816084 180.644