Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1311 ATGACTAGAAGGAAGGTAAACCTTACATTCATTGAGGATGATTCTTCAAGAAAGACATCTTATAAGAAAAGGAAGAAGGGAATATTGAAGAAGGTCAAAGAACTTACCATCCTATGTGGAATTGAAGCATGTGCTATAATATATAGCGACTTTGATGGCAATAAAAAGCCACAAATTTGGCCATCTCCTTCAGGTGTTGAAAGAGTCATCACCAACTTCAAAAGGTATTCACAAGTGGATCAACATAGGAAGATGCTCAACCTAGAGACATACATGAAGGAAAGGGTTAATAGGGCTAAAGAGCATTTGGAGAAAATAAGGAAGGACAATAGGGAGAAGGAAATGACCTTGCTCATGAACCAATACCTTGCTCATGGTGAGATTTTTGACAATAACTTGACTATGGTTGATCTCAATGATCTCGCATGGGTGATTGGGCAGAAGATTGATGAAATCAACCATAGGCTGAGTGTACTTAATTTAAACTCGGCTTCATCATCGTCAAGCCAAGCCCAACAACAAAAGCATGAAGTTGAAGAGAATCATCAAGTGGCGGTGGCGGCGGTGGCAGCGGCGAAGAATGAGGTAGCTGATCAAGGACAAGATCGTGGCAAAGGAGTTCTTGAGATGAACATGGATGACACACAAGAACTACCATGGTACCTTAACTTGATCAATGGTGGAGAGGATGAGAATCAATTGTTGTCATTTGATAATGATGACCTATGCAAGTGA 735 0.4054 MTRRKVNLTFIEDDSSRKTSYKKRKKGILKKVKELTILCGIEACAIIYSDFDGNKKPQIWPSPSGVERVITNFKRYSQVDQHRKMLNLETYMKERVNRAKEHLEKIRKDNREKEMTLLMNQYLAHGEIFDNNLTMVDLNDLAWVIGQKIDEINHRLSVLNLNSASSSSSQAQQQKHEVEENHQVAVAAVAAAKNEVADQGQDRGKGVLEMNMDDTQELPWYLNLINGGEDENQLLSFDNDDLCK* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1311 244 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Aev01g1311 244 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Aev01g1311 244 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Aev01g1311 244 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Aev01g1311 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 - -
Aev01g1311 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 207 - -
Aev01g1311 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev01g1311 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev01g1311 244 Coils Coil 93 116 - -
Aev01g1311 244 Coils Coil 161 181 - -
Aev01g1311 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1311 Aev-Chr1 14857721 14858455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1311 1 188 Type I MADS-box Gene Family AT5G48670 48.148 4.05e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev01g1311 SRF-TF 4.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1311 - - gmx:100813231 191.815