Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1310 ATGGTTAAAAAGAGAGACATCACCACATACATTTCAAATGATGCAAAGAGGAAGGCAATCTTGAGGAAAAGAAAAAATGGTCTTTTCAAGCAGATTAATGAGCTCACCACCCTTTGTGGAATTGAAGCTTGTGCTATCATCCAAAATCCTAATGAACCTCAACCTGCTGAAATTTGGCCATCCCCTTCAGGAGCTACAAGGGTGATCTCCAAGTTCGTCGAATTACCGGAATCGTTTCAAAGCAAGAACATGTTAACTCAAGAGAGCTTCTTGATGGAAAGGATCAAGAAGGTTGAAGATCAGCTGAAACAACAAATGATTGAAAAAAGGAAGAAACAGTTGCACAATCTTATGATCCATTGCTTGGAAGATGCTTGTGCTATCATCCAAAATCCTAATGAACCTCAACCTGCTGAAGTTTGGCCATCCCCTTCAGGAGCTACAAGGGTGATCTCCAACTTGTCTATCATCCAAAATCCCAATGAACCTCAACCTGCTGAAGTTTGGCCATCCCCTTCAGGAGCTACATGGGTGATCTCCAAGTTCGTCGAATTACCAGAATTGTTTCAAAGCAACAACATGTTAACTCAAGAGAGCTTCTTGATGGAAAGGATCAAGAAGGTTGAAGATCAACTGAAGCAAAAAATGATTGAAAATAGAAAGAAAGAGTTGCACAATCTTATGATCCAGTGCTTGGAAGATGGTCAGGAAAAGAAAAATGGTCTTTTCAAGAAGATTGATGAGCTTACCACCCTTTGTGGCATTGAAGCTTGTGCTATCATCCAAAATCCTAATGAACCTCAACCTGCTGAAGTTTGGTCATCCCCTTCACGAGCTAGAAGTGTGATCCCCAAGTTCATTGAATTGTCGGAATCGTTTCAAAGGAATAACATGTTAACTCAATAG 906 0.4051 MVKKRDITTYISNDAKRKAILRKRKNGLFKQINELTTLCGIEACAIIQNPNEPQPAEIWPSPSGATRVISKFVELPESFQSKNMLTQESFLMERIKKVEDQLKQQMIEKRKKQLHNLMIHCLEDACAIIQNPNEPQPAEVWPSPSGATRVISNLSIIQNPNEPQPAEVWPSPSGATWVISKFVELPELFQSNNMLTQESFLMERIKKVEDQLKQKMIENRKKELHNLMIQCLEDGQEKKNGLFKKIDELTTLCGIEACAIIQNPNEPQPAEVWSSPSRARSVIPKFIELSESFQRNNMLTQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1310 301 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Aev01g1310 301 SMART madsneu2 218 275 IPR002100 GO:0003677|GO:0046983
Aev01g1310 301 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Aev01g1310 301 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 239 265 IPR002100 GO:0003677|GO:0046983
Aev01g1310 301 SUPERFAMILY SRF-like 9 97 IPR036879 GO:0003677|GO:0046983
Aev01g1310 301 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 238 301 - -
Aev01g1310 301 PANTHER MADS BOX PROTEIN 156 232 - -
Aev01g1310 301 Coils Coil 92 112 - -
Aev01g1310 301 Gene3D - 236 301 IPR036879 GO:0003677|GO:0046983
Aev01g1310 301 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Aev01g1310 301 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Aev01g1310 301 CDD MADS_SRF_like 3 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev01g1310 301 PANTHER MADS BOX PROTEIN 9 119 - -
Aev01g1310 301 PANTHER MADS BOX PROTEIN 238 301 - -
Aev01g1310 301 SUPERFAMILY SRF-like 237 296 IPR036879 GO:0003677|GO:0046983
Aev01g1310 301 Coils Coil 205 225 - -
Aev01g1310 301 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 119 - -
Aev01g1310 301 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 156 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1310 Aev-Chr1 14840010 14846316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1310 237 301 Type I MADS-box Gene Family AT5G27960 44.615 1.26e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev01g1310 SRF-TF 3.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1310 - - gmx:100785964 145.206