LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev01g1162	ATGCCTATATGCTTGTATATGTTGATGCTTGTTGTTTCTCCATTTTGGATGAGTGGGAAGGTTTCAAAGACATGCATTGACCGTGCAATCAAAAGCCAACCTCTTCTATTGGGTTGTTCAACCAGCAAGCTGAAGTCGATGATGGATCAGTTGACCGATCTTGGAGTTAAAGGCAAGAAGTTGGATAAGGTTGTTGCTAGAAGTCCTCAATTACTATTACAGAAGCCCAAAGACTTTCTACAGGTTATTCTGTTCTTTGAAAATATGGGTCTTGATAGAGAAACTATAGGGAGGATTCTTGCTCGCTGCCCTCAAATATTTGCTGCCAGCATTAATAGAACTCTCAAGAGGAAGATTGAATTCCTTTGTGGGGTTGGTGTTTCTGAAGCTTATCTTCCTAGGGTTATAAAAAAATATCCAGAATTACTTGTGTCTGACACTGACACAACTTTATTGCATCGGCGGATGTACTTGATGAAGCTGGGGCTCTCAGAAAAAGAAGTTGCATTTATGGTACGCACATTTTCTCCTCTCCTCGGGTACAGTATAGAGAAGGTTTTGAGGCCAAAAATAGAATTCCTGGTGAACTCAATGGAGAGGCCGATAAAAGATGTTGTGGACTACCCCAGGTACTTTAGCTATTCCTTAGAACACAAGATAAAGCCAAGATATTTTATGCTGAAAAGAAGGCATATTGAATGTAGTTTAAGGGATATGCTAGGAAAAAATGATGAAGAATTTGCTGCAGAATTTTTGGGTGTAGGAAGGATAAATGACTCCCCTCCTCCTTTGTGTTCTGATGATAGTTTGTAA	813	0.3973	MPICLYMLMLVVSPFWMSGKVSKTCIDRAIKSQPLLLGCSTSKLKSMMDQLTDLGVKGKKLDKVVARSPQLLLQKPKDFLQVILFFENMGLDRETIGRILARCPQIFAASINRTLKRKIEFLCGVGVSEAYLPRVIKKYPELLVSDTDTTLLHRRMYLMKLGLSEKEVAFMVRTFSPLLGYSIEKVLRPKIEFLVNSMERPIKDVVDYPRYFSYSLEHKIKPRYFMLKRRHIECSLRDMLGKNDEEFAAEFLGVGRINDSPPPLCSDDSL*	271

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev01g1162	270	Pfam	mTERF	15	248	IPR003690	GO:0003690\|GO:0006355
	Aev01g1162	270	SMART	mt_12	27	57	IPR003690	GO:0003690\|GO:0006355
	Aev01g1162	270	SMART	mt_12	169	201	IPR003690	GO:0003690\|GO:0006355
	Aev01g1162	270	SMART	mt_12	97	128	IPR003690	GO:0003690\|GO:0006355
	Aev01g1162	270	SMART	mt_12	202	233	IPR003690	GO:0003690\|GO:0006355
	Aev01g1162	270	SMART	mt_12	62	92	IPR003690	GO:0003690\|GO:0006355
	Aev01g1162	270	SMART	mt_12	133	164	IPR003690	GO:0003690\|GO:0006355
	Aev01g1162	270	PANTHER	TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL	73	260	-	-
	Aev01g1162	270	Gene3D	Transcription termination factor 3, mitochondrial	12	255	IPR038538	-
	Aev01g1162	270	PANTHER	CGI-12 PROTEIN-RELATED	73	260	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev01g1162	Aev-Chr1	12261594	12271438	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Aev01g1162		mTERF	4.7e-73	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev01g1162	K15032		-	gmx:100802127	377.481