Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1148 ATGACTAGAAAGAAGCTTGACCTCAAATACATAGAGAATGACTCAAAGAGGAGAGCAACTTTGAAGAAAAGGAAGAGCGGTTTGATCAAGAAAGTTGAAGAGATTACCACCCTTTGTGGAATCGAAGCTTGTGCTATTGTCTATTCCCCTAATGAACCTCAACCTGAGGTTTGGCCATCCCCTTTGGGAGCCAGAAGGGTGATCTCCAAGTTTAGGGAAATGCCTGAACCAGAGCAAAGCAAGAAGATGCTGAATCAAGAGAAGTTCTTGAGGCAAAGGATTCAAAAGGCTCAAGAACAACTGAAGAAGCAAATGGTTGACAACAGAAAAAATGAGATGACAACTCTTATGTTCCATTGCCTGAATGCTGGTGAGGTCTTTGACAGATTCGACTTGATTGATCTCAACGATCTTTCATGGACAATTGACCAAGCTCTCAAAGAAATCAATCGAAAGATTGATAGTATCCAAAGCCAAGAGGGGACTTCAAATGGGGAAACATCCATCAATGAAGAGCTACCACAAGAGGAAGTCATGCAAAATCAACCATGGTCTGCAGAGAATACAATCAGTGGAGGTGAAGGTTATGAAGTGGAACCATTTGGGGATGTTGTTAATCTCCAAAATGGCTATTTACCAGCCCCATTCAACCCATGA 657 0.4201 MTRKKLDLKYIENDSKRRATLKKRKSGLIKKVEEITTLCGIEACAIVYSPNEPQPEVWPSPLGARRVISKFREMPEPEQSKKMLNQEKFLRQRIQKAQEQLKKQMVDNRKNEMTTLMFHCLNAGEVFDRFDLIDLNDLSWTIDQALKEINRKIDSIQSQEGTSNGETSINEELPQEEVMQNQPWSAENTISGGEGYEVEPFGDVVNLQNGYLPAPFNP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1148 218 Coils Coil 80 107 - -
Aev01g1148 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev01g1148 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev01g1148 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev01g1148 218 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Aev01g1148 218 MobiDBLite consensus disorder prediction 157 197 - -
Aev01g1148 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Aev01g1148 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Aev01g1148 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev01g1148 218 MobiDBLite consensus disorder prediction 157 189 - -
Aev01g1148 218 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Aev01g1148 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 181 - -
Aev01g1148 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev01g1148 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1148 Aev-Chr1 12009092 12009748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1148 1 168 Type I MADS-box Gene Family AT5G48670 55.357 4.68e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev01g1148 SRF-TF 1.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1148 - - aip:107644294 246.899