Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1147 ATGACTAGAAAGAAGGTGAAGCTTGCATTCATAGTGAATGACTCTGCTCGGAAGGCAACATACAAGAAGAGAAAGAAGGGGCTTTTGAAGAAGGTTGATGAACTAAGCACCCTTTGTGGAATCGAAGCTTGTGCTATAGTTTATAGCCCTTATGACCCAGAACCTGAGGTTTGGCCAACACCATGGGGTGTCCAAAGGGTGCTTGCGAAATTCAGGAACATGCCTGAATTGGAGCAGAGCAAGAAGATGGTGAACCAAGAGACTTTCCTGAAACAGAGGATCCTTAAGGCGAAGGAGCAGGTGAAGAAGATAAGGAAGGAGAATAGGGAGAAAGAGATGACACAACTCATGTTTCAGTACCTTAGTGTTGGGAAGATCATTCATAACAACATCTCAATGGTTGATTTGAATGATCTTGCTTGGTTGATTGACCAGAACTTGAAGGACATTGGTAGGAGGTTGGAAACACTGAACAAGAGGGCTCAGAATATGAATCTAAGCCAAGGCCAAGGCCAAGACCAAACAACAACACCAACACTACCATTGGGATTATTGACAGTGGCTAAGAGTGAGGAATTGACTCTTATGGATCATCATGGAAATAATAATGGGTTGGAGATGAATAATGTTGCTTCTGCTTCTGCTTCTGCTTCTGCCTCTTCAGTTGTTGCTGATAATGTGCCAAAGAATTGGTTCATGGATTTGATCAATGGAAATGGGGATGAGACTATGCCATTTGATGCAGAAGGCTTTGCTGGAGGTGTATGGGTTTTCTGGGATCTCTCTATTTGGTCAGTAGATATCTTAGCTCATGATAAACAATTCATCCATATGAAAATTGGGACTCCTGGAGATTGTAATTGGTTTTTCACTGCCTGTTGTGGTAGACCTCAAAGGGTAATCCGTGAGAAGCTCTGGAAAGCCATTCGAGATATTAATGGTTCAATTAATGGGCCTTGGATGGTGGCTGGGGATTTTAACTCTATTCTCTCTGAAGAAGAGGTTGTTGGCTCCTCTAGAGTTAGACGAGTCTGCACTCATTTCAGAAACTGCATTGATGACTGTTCTTTGAGAGATGCAGGTTATCATGGTCCTTTCTTTACTTGGAGGAGAGGGAATCTAAAGGAGAGACTCGACAGAGCTTTAGTTAATGATGAATGGATGAATTCGTTTGAAGATTTTAATGTGATCCATTTGCCATCTTTCAACTCTGATCATAGTCCTCTTTGGATGAGAGCGAGAATGGAATTGGTGTCTACTAATCCAAAACCATTCAAATTTTTGGCTGCTTGGTTGGGTCATGCAGGTTTTAAAGATTTGGTGACTAATAATTGGAATCCCAATCTCTCATGGGGCTCTAACATCAATCAGTTCTGCTCTGCTGCTAGAAAATGGAATTATGAGGTTTTTGGGAATATTCTTAGGAGAAAATCTCGATTAATAAGGAGGCTCCAGGGGATTCATAAATGCCTTCAATCCGTGGACAACCCTTTTCTTGAAATGCTCCAACAAGAGCTTTGGAGGGAATATGAGGTGGTCTTGTTGGAAGAAGAATCTCTATGGGCTCAAAAGGCTAGAATTAACTGGATCACTCAAGGAGACCGCAACACAAAATTTTTTCACCGGTCTACTGTTAACAGGAGAAGGATGAACTGCATTTTATCTTTGAAGGATGCTGATGGTCGCATGATTCATGATACCCCTACCCTCAAGCTTATGGTTAAAAACTTTTTTGTTGAGCTATTTGAGGAGGAATTTTCTCCTAGACCTTTCCCTTTCAGAGGAGGCTTCCCTAGTGTGTCTCAAAGGGATTGGAATTTTATTAACAGACCCGTCTCTTATGAAGAGATTAAGAGTAACCTGTTTAACATGAGTCCTCTCAAAGCTCCAGGTCCTGATGGGCTCCATGCCCTCTTCTTCCAGAGTCAATGGGACCAGATGCCTTTTGTAACAACTCTGGCGAAAAAATCAGCAAGGAAAAGACTAAAATCTTCTTTTCATCCAACGTTAACCATCTTAGTAAACTGGGTTACTAACTCTTTATCGTTGGCGGGACGTATCACCCTATGCTCTTCTGTTATCTCTACCACCCCTTTATATGCAATGCAATCTACCTTTCTACCTAATCCGGTTTGTGAGAAAATGGACAGCATCACAAGATCTTTCCTTTGGGGCTCTAATCCGGAGAAGAGGAAAAGCCACCTTAGCAATTGGGAGGAGGCGTGTAAGCCCAAAGCTTGTGGCGGCCTGGGGCTTCGCTCTGCTCGCTTATCTAACTTGGCTTTTATGTCGAAACTTGGTTGGGGTTTGATTAAAAATCCAGAGGAGCTTTGGGTGAGGGTGTTGAAAGCCCGTTATAAATGTGGCAGTAACATTATTCCTTCGGTTCAGTTCAGGAATGGTTGTTCTAACACTTGCAAGGGGATCTGTGCAGCCTGGAATCATGTTCAAAAGAATATCTGTTGGAGGGTCGGTGATGGTACAAATGTAAAGTTTTGGCTCGACCCTTGGGTTCCTTTTGCTGGTAAACTTGCTCCCCACTCTTTGGTCACTCTTACTCCTGATAAGTATGACTGGAGGGTGGCTAACTTTGCTACTAGTTTAGGTGCTTGGAATTGGGACAGGTTAAGAGCCCTGCTGCCATATAATATATGCCAGAAGATAGCTAGCCTTGTTCCACCTTCTTCTATCTTGGGGAAAGATTCGATTGCTTGGGGTGGTAGTCATGACGGAGACTTTAATGTTAAATCTTCGTACCTTATTTCAACGGGTTTTTCAAGAGACCAAGAGGACCCCCTATTCAAATTAATCTGGAGATGGAAAGGATTGAAAAGGATTCAGATTTTCCTTTGGCAAGTTGCTACTGGAGCCCTTCCAACAAACTCCTTTCGTCACTCCCGCCATTTGACAGATAACCCACATTGTACTCACTGCAACTTAGGTGTTGATGAATCTATCCTTCATGTTGTAAGAGATTGCCCTCTAGCCACAGGTGTCTGGCAGAAAATGATTGACCCCATGCTCTCTCCTCAATTTTATACATCCAATCTCCGTCCTTGGCTCTTAGAGAATTTGTCCTCCCAAGCGGGCTGGTCTTCGGCTTTTGCTACTGCTCTGCATCTTCTTTGGAGAGTTAGGAATGAGGAACTGTTCGAGAAACTCACCCCCTCCTCGCAGGATATTTTTCTCCGATTTGGATCCGTTTTAAACAACTACCAGATCCAATCTCAGTACGTTTCTAAACATACAAGACATAATTCTCTTATTGGGTGGACATTCCCCCCTCAAGGTTGGTTTAAGGCTAACTCGGATGGGTCTGTTGGTGTGAATTCTGTTGCCGCTTGTGGTGGTTTGATTCGGGATATGTCTGGACGATTCATTTCATGGTTTTCTGCCAATATTGGATGTTGTCCTATCACTATTGCTGAACTATGGGGTTGTTATCATTTACTCCATTTGGCTTGGAACAATGGAGTACGTTTCCTGATTTTTGAGATGGATTCTGAAGCTGCCATCAATTTAATTAATAATGGGGTATCTAACCGCCATCCTTATTCTCGCATTCTGGATCTGATCTCAGAACTACTGTCTAGGGAATGGACGGTCTCTATCCATCATGTCTTTAGAGAAGCCAATAGAGCTGCCGACCTATTGGCCATGGGCCTTACCATATTATCCTATCCCCCTCCTACACTTGTACCTCTTCTTAGGGATGACTCTATTGGGGTCATGTTCCCTAGAGGATTCTAG 3750 0.4304 MTRKKVKLAFIVNDSARKATYKKRKKGLLKKVDELSTLCGIEACAIVYSPYDPEPEVWPTPWGVQRVLAKFRNMPELEQSKKMVNQETFLKQRILKAKEQVKKIRKENREKEMTQLMFQYLSVGKIIHNNISMVDLNDLAWLIDQNLKDIGRRLETLNKRAQNMNLSQGQGQDQTTTPTLPLGLLTVAKSEELTLMDHHGNNNGLEMNNVASASASASASSVVADNVPKNWFMDLINGNGDETMPFDAEGFAGGVWVFWDLSIWSVDILAHDKQFIHMKIGTPGDCNWFFTACCGRPQRVIREKLWKAIRDINGSINGPWMVAGDFNSILSEEEVVGSSRVRRVCTHFRNCIDDCSLRDAGYHGPFFTWRRGNLKERLDRALVNDEWMNSFEDFNVIHLPSFNSDHSPLWMRARMELVSTNPKPFKFLAAWLGHAGFKDLVTNNWNPNLSWGSNINQFCSAARKWNYEVFGNILRRKSRLIRRLQGIHKCLQSVDNPFLEMLQQELWREYEVVLLEEESLWAQKARINWITQGDRNTKFFHRSTVNRRRMNCILSLKDADGRMIHDTPTLKLMVKNFFVELFEEEFSPRPFPFRGGFPSVSQRDWNFINRPVSYEEIKSNLFNMSPLKAPGPDGLHALFFQSQWDQMPFVTTLAKKSARKRLKSSFHPTLTILVNWVTNSLSLAGRITLCSSVISTTPLYAMQSTFLPNPVCEKMDSITRSFLWGSNPEKRKSHLSNWEEACKPKACGGLGLRSARLSNLAFMSKLGWGLIKNPEELWVRVLKARYKCGSNIIPSVQFRNGCSNTCKGICAAWNHVQKNICWRVGDGTNVKFWLDPWVPFAGKLAPHSLVTLTPDKYDWRVANFATSLGAWNWDRLRALLPYNICQKIASLVPPSSILGKDSIAWGGSHDGDFNVKSSYLISTGFSRDQEDPLFKLIWRWKGLKRIQIFLWQVATGALPTNSFRHSRHLTDNPHCTHCNLGVDESILHVVRDCPLATGVWQKMIDPMLSPQFYTSNLRPWLLENLSSQAGWSSAFATALHLLWRVRNEELFEKLTPSSQDIFLRFGSVLNNYQIQSQYVSKHTRHNSLIGWTFPPQGWFKANSDGSVGVNSVAACGGLIRDMSGRFISWFSANIGCCPITIAELWGCYHLLHLAWNNGVRFLIFEMDSEAAINLINNGVSNRHPYSRILDLISELLSREWTVSIHHVFREANRAADLLAMGLTILSYPPPTLVPLLRDDSIGVMFPRGF* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1147 1249 Pfam zinc-binding in reverse transcriptase 913 1000 IPR026960 -
Aev01g1147 1249 SUPERFAMILY DNase I-like 245 412 IPR036691 -
Aev01g1147 1249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Aev01g1147 1249 CDD RNase_H_like 1102 1220 IPR044730 -
Aev01g1147 1249 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Aev01g1147 1249 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Aev01g1147 1249 PANTHER RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN 81 475 - -
Aev01g1147 1249 SUPERFAMILY Ribonuclease H-like 1098 1219 IPR012337 -
Aev01g1147 1249 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 81 475 - -
Aev01g1147 1249 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aev01g1147 1249 Coils Coil 147 167 - -
Aev01g1147 1249 Coils Coil 87 114 - -
Aev01g1147 1249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev01g1147 1249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev01g1147 1249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev01g1147 1249 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Aev01g1147 1249 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 675 1224 - -
Aev01g1147 1249 Gene3D - 1098 1222 IPR036397 GO:0003676
Aev01g1147 1249 Pfam Reverse transcriptase-like 1102 1219 IPR002156 GO:0003676|GO:0004523
Aev01g1147 1249 PANTHER RETROTRANSPOSON, UNCLASSIFIED-LIKE PROTEIN 675 1224 - -
Aev01g1147 1249 Gene3D Endonuclease/exonuclease/phosphatase 228 412 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1147 Aev-Chr1 11995851 12007706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1147 1 157 Type I MADS-box Gene Family AT5G48670 64.331 2.32e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev01g1147 RVT_3 5.9e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1147 - - aip:107607211 426.402