Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1117 ATGTCGTATGTGCCTCCACACCTCAGGAACTCCACCACCACCACCGTCGCCGCCGCCACCACCACCACCACCACCGTCGCTACCAAAACCTCCTCTGTAACCCTAGACAACAACAACAACCACCACACCAAGCTCGCATTCCCTTCTTCCTCGAACTCACTCTCACACTCAAACTCTCACTCCAACAACAACTACAACAGCAATTCACTCTCTTCTTATGCATCTCGTCGGAGCTCCGCTGCTCCTTCGCCGTCGCGGATTCTCGCCGCCCCCGACCCTGTCTTCCCTCACTGGCAACCCTCCGAGCGTGTTTCCCGAATGAACGTCGACCAGATTGAAGAGGTCCGGCTAAGACTTAATCTTGATGTTACTGTTGCATCTGACTCTCCAGCTGCACCCACACCAATAGAATCATTTACTGATATGTGTTTGCATCCCAGTATCATGAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATTCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCTCAATCTCCAATTCGGCGTGGCGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCACAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTGAAAACTGCTATAGTTGTGGGTGGGACTAACATTGAAAAACAGAGGTCTGAGCTAAGAGCTGGAGTTGAAATAGTGGTTGCCACTCCTGGAAGATTTATTGATCACTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGCTTTGAACCACAGATAAGAGAGATAATGAGAAGTCTTCCAGAAAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTTGAGATCGAAGCATTAGCAAAGGAGTACTTGTCTAGCCCTGTGCAAGTCAAGGTTGGAAAAGTGAGTAGCCCGACAACAAATGTTTCACAAACTCTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGGCTTCTAGGTTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGCCATCCATTTCCACTAACAATTGTGTTTGTTGAAAGAAAGACAAGATGTGATGAAGTTGCTGAAGCTCTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAGAGTGAAAGAGAGGCGGCTTTGCATGAATTTCGGAGTAGCTCCACCAGCATTTTGGTTGCCACTGATGTCGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCTGGATCGACAGGCCTAGCTACATCATTTTACACTGATCGTGACATGTTCCTTGTGGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGCAACACTGTGGCATTTGCAACTGGAAAGGTTGCCAGAAGGAAGGAGAAAGAAGCGGCAGCTGCACAAAAAGAGGCAAATATTGCTTCATCCAAACACCTAGGGTTAGGAGCTGCTCCAATTAACATCGAAGACAAATATAAATTCATGATTACTGCCTCAAACATTAAAAAAGTAGGTGCAGCAGATAGTGCTTGGGATGATTAG 1749 0.4614 MSYVPPHLRNSTTTTVAAATTTTTTVATKTSSVTLDNNNNHHTKLAFPSSSNSLSHSNSHSNNNYNSNSLSSYASRRSSAAPSPSRILAAPDPVFPHWQPSERVSRMNVDQIEEVRLRLNLDVTVASDSPAAPTPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQSPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALAKEYLSSPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLGLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHEFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIASSKHLGLGAAPINIEDKYKFMITASNIKKVGAADSAWDD* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1117 582 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 290 298 IPR000629 -
Aev01g1117 582 SMART helicmild6 404 485 IPR001650 -
Aev01g1117 582 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 49 547 - -
Aev01g1117 582 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Aev01g1117 582 CDD SF2_C_DEAD 356 494 - -
Aev01g1117 582 Gene3D - 350 544 IPR027417 -
Aev01g1117 582 MobiDBLite consensus disorder prediction 32 98 - -
Aev01g1117 582 Coils Coil 223 243 - -
Aev01g1117 582 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 547 - -
Aev01g1117 582 Pfam Helicase conserved C-terminal domain 387 485 IPR001650 -
Aev01g1117 582 Gene3D - 97 348 IPR027417 -
Aev01g1117 582 SMART ultradead3 156 359 IPR014001 -
Aev01g1117 582 Coils Coil 526 546 - -
Aev01g1117 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 505 IPR027417 -
Aev01g1117 582 CDD DEADc 148 345 - -
Aev01g1117 582 MobiDBLite consensus disorder prediction 32 82 - -
Aev01g1117 582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 526 IPR001650 -
Aev01g1117 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 344 IPR014001 -
Aev01g1117 582 Pfam DEAD/DEAH box helicase 161 331 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1117 Aev-Chr1 11648256 11657040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1117 137 507 Eukaryotic Initiation Factors Gene Family AT1G72730 35.829 1.31e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1117 K12823 - gmx:100818387 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1117 01 11648256 11657040 Aev01g1117 01 11648256 11657040 ECH