Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g1017 ATGCGACGCCATGTAGAGCTGGAGCGTTACCATGATTGCGATACTTCCAAGTTTAAAAGTGTCATTTCTATTAAAGCTTGGCCATACAAGGGGATGGACATTCAACCAAAACTCGAATTAGAAAATAATACTCCACTTTCTGTCATTTATCCTGGTGAAGGGGATGTAGGTGATGAAGAAGAGGTTGGTGCGTTCTCTTCCTATCGTGCTTGTGGCACCTCTAAGAAGCGTAAGAAGAGCTCATCTAGTGTAGATGATATGGACATTGAACCTAGATGGGAATGCAGAAACCCCATAAATAAAGATAAAGGAAAAAGATATCGGTCAACACCTTCAAGAAGTAGAAATAAAGATGATGAAGAAAGAGCTTATAAAGATAGAACCGTAAACTCTGCTATCTACAAGGAAATGATAGATTCATACATGAATAATAATAGAATATCAAACAAGGAAGAACCAAGCTTAAGGGATCAGTGGATTGAAACAAGCAACTTTGAGCTGAAAAATGGAGAAGGAACATCTCACATGAAGGAAGATGCAGAAATGTCTGACATATATAAGTTGTGGAAAGAAATGGATTCATCACTAACATCAATTTATCTTCAAGATGATGTTGTTCCTGGTGATACCAAAAAAATAAGTGATCATGACAATAAATTGGATGAAGAGATTGGAATCTACTGTCTTAGATGTGGTGTTGTGAGCGTCGACATTACGAGTATCACCCCAGACTTTTTGCCACGCGTAAGAAGGCGCCATCAAGAAGAGGAGGAGGAAGAGAAGAAGAAACAAAATGGAGAACAAGAATCATATAAGCTAAAGACTAATCACAAACTTGTCAAGGCTCAAGATTCTACCAATGTGCCTATACCTCAAGATTCTGCCATTGAACCTATACCTCAAGAAAATACTAAAATTTGGGATTTGGTTCCGGGGCTAAAAGAAAAGATGCATGTCCACCAGAGGAGAGCCTTTGAATTTCTTTGGCAAAACATTGCAGGGTCTATAGAACCAACACAAATGGAAGCAGAATCCAAAAACAGTGGTGGTTGTGTGATATCTCATTGTCCAGGAGCAGGAAAAACTTTCCTCATCATCGCCTTTCTTACAAGCTTCTTGAAGCTATTTCTAGGGAAGAGAGCATTGGTGTTAGCTCCAAAAACCACATTGTACACTTGGCATAAGGAGTTTATTAAATGGGAGGTTCCTATTCCGGTGTATTTAATTCATGGACGTAGATCACATAGAGAGTTGAAGAAGACAGAGTCCATTCCTGGTGTTCCAAAGCCAACAAATGATGTAAATCATGCTTTGGATTGTTTAGAAAAGATACAAAAGTGGCGTGATCACCCTAGTGTTCTAGTTATGGGATACACTTCTTTTTTAGCAATGATGAGAGATAATTCAAAGTATGATCACATGAAGTACATGGCAAAAGAGATAAGGGAGAGTCCCGGGTTGCTGATACTTGACGAAGGGCACAATCCAAGGAGTACCAAATCGAAGCTTAGGAAAGTTCTGATGACAATAGAGACAGAACATAGAGTGCTACTATCAGGTACATTATTTCAAAATAATTTTTGTGAGTACTTCAACACATTGTGCTTGGCGAGGCCAAAGTTTATCCAAGAAGTGTTGAATTTACTAGACACCAACTACGAGAAGCTCAAGGTAGTAAAGAAAGCCTCACATTTGGTTGAGGGGCGCGCTCGGAAGTTCTTCCTAGACAAAATTGGCAAGATAATTCAGTCAAAGGATGAGGAATCTTTCCTCAGTGAAGCGAGTATACAAAGTATGAACTTGTTGAAAAAACTCACAAGTGGTTTTATTGATGTTTATGAAGGTGGATACCATGACACACTCCCAGATTTGAAAATTTATACTTTGTTGATGAACACAACTGAAGTACAGCAGAGGATTCTAAAAAGACTTCACAAGAAAATGGCTAAGTATACTAGTTACCCCTTGGAGATAGAGCTTCTAATAACACTTGGGTCAATACATCCATGGCTGATAACAACAACAAAATGTGCTTCTAAGTTATTCTCTTATGGGCAATTAATGGAATTGAACAATTACAGGTATGATTTAAGGATAGGGGCAAAAGTCAGATTTATTATGAGCCTTGTCCACAGAGTTTTCAAGGAGGAGAAAGTTCTCATCTTCTGCCACAACATTGCACCTATCAAGATGTTATTGGAACACTTTGACATGTGTTTCAAGTGGAAAAAAGACAAAGAGATTCTCGTGATAACCGGTGCACTTGAACTCTTTGAAAGAGGGGAAGTGATAGATAAGTTTGAAGACCCTCGTGGTGCATCCAAGGTGTTAATTGCTTCGATCACGGCTTGCGCCGAAGGGATTAGTCTTACTGCAGCATCAAGGGTTATTATGTTGGATACTGAGTGGAACCCATCAAAGACTAAGCAAGCTATTGCAAGGGCTTTTAGGCCTGGTCAGCAAAAAATGGTTTATGTGTATCAGTTAACTGTTATGGAGTCAATTGAGGAAGATAAGAGTAAGATAACAACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAATGAGGAAGTTGTGGAACCTTCACAATCTCAAGCACAAAACATTGAGGATGATGTACTTAGGGTGATGGTTGAAGAGGACAAGTCTAAGGCATTCTATAAGATCATGACATTGCACATGGAAAAGCCTACAAACTTATCATGA 2706 0.3895 MRRHVELERYHDCDTSKFKSVISIKAWPYKGMDIQPKLELENNTPLSVIYPGEGDVGDEEEVGAFSSYRACGTSKKRKKSSSSVDDMDIEPRWECRNPINKDKGKRYRSTPSRSRNKDDEERAYKDRTVNSAIYKEMIDSYMNNNRISNKEEPSLRDQWIETSNFELKNGEGTSHMKEDAEMSDIYKLWKEMDSSLTSIYLQDDVVPGDTKKISDHDNKLDEEIGIYCLRCGVVSVDITSITPDFLPRVRRRHQEEEEEEKKKQNGEQESYKLKTNHKLVKAQDSTNVPIPQDSAIEPIPQENTKIWDLVPGLKEKMHVHQRRAFEFLWQNIAGSIEPTQMEAESKNSGGCVISHCPGAGKTFLIIAFLTSFLKLFLGKRALVLAPKTTLYTWHKEFIKWEVPIPVYLIHGRRSHRELKKTESIPGVPKPTNDVNHALDCLEKIQKWRDHPSVLVMGYTSFLAMMRDNSKYDHMKYMAKEIRESPGLLILDEGHNPRSTKSKLRKVLMTIETEHRVLLSGTLFQNNFCEYFNTLCLARPKFIQEVLNLLDTNYEKLKVVKKASHLVEGRARKFFLDKIGKIIQSKDEESFLSEASIQSMNLLKKLTSGFIDVYEGGYHDTLPDLKIYTLLMNTTEVQQRILKRLHKKMAKYTSYPLEIELLITLGSIHPWLITTTKCASKLFSYGQLMELNNYRYDLRIGAKVRFIMSLVHRVFKEEKVLIFCHNIAPIKMLLEHFDMCFKWKKDKEILVITGALELFERGEVIDKFEDPRGASKVLIASITACAEGISLTAASRVIMLDTEWNPSKTKQAIARAFRPGQQKMVYVYQLTVMESIEEDKSKITTWKEWVSNMIFNEEVVEPSQSQAQNIEDDVLRVMVEEDKSKAFYKIMTLHMEKPTNLS* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g1017 901 Coils Coil 254 274 - -
Aev01g1017 901 Gene3D - 289 571 IPR038718 -
Aev01g1017 901 MobiDBLite consensus disorder prediction 95 126 - -
Aev01g1017 901 Gene3D - 622 897 IPR027417 -
Aev01g1017 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 863 IPR027417 -
Aev01g1017 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 647 IPR027417 -
Aev01g1017 901 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 62 891 - -
Aev01g1017 901 SMART ultradead3 313 545 IPR014001 -
Aev01g1017 901 Pfam SNF2-related domain 315 544 IPR000330 GO:0005524|GO:0140658
Aev01g1017 901 MobiDBLite consensus disorder prediction 249 276 - -
Aev01g1017 901 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 62 891 IPR044567 GO:0080188
Aev01g1017 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 540 IPR014001 -
Aev01g1017 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 705 853 IPR001650 -
Aev01g1017 901 SMART helicmild6 734 819 IPR001650 -
Aev01g1017 901 Pfam Helicase conserved C-terminal domain 702 818 IPR001650 -
Aev01g1017 901 CDD SF2_C_SNF 699 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g1017 Aev-Chr1 10131107 10134508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g1017 748 873 RAD5 or RAD16-like Gene Family AT5G05130 35.433 1.67e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev01g1017 SNF2_N 5.9e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g1017 K10875 - gmx:100811703 962.214