Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0889 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATGCGCATTCGTTACAACCTAGCAGTGTCTATTCTGAGCCTTGGTGGCGTGGTGTTGGTTACAGTTCTGTCCCACAAGTAATGGCTGGTGCAAATGCATCCAATTCATCCTCTCTTGAATGCCCTAATGGTGATTCAGAATCCAATGACGAAGGTCACTCTTTGTCCAATAGTGGGATGAATGAGGAAGATGATGATGCTGCCAAGGATTCTCAGCCTGCTGATCCTAATCAATCAGGAAACAATGGACAAGAACACCAAGGGATTCAGCATGCTGCACCTTCCATGCGCGAAGAAGGCCTTACTCAGGCTCCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTTTCAAGATCCATACTATGGAGGCATGATGGCAACTTATGGATCCCAGCCGTTGGGATATGCTCCTTTTTTGGGAATGCCTCATGCCAGAATGCCTTTGCCTCTTGAGATGGCACAAGAGCCTGTATATGTGAATGCTAAACAATACCAAGGAATTCTTAGGCGCAGACAGGCTCGCGCAAAAGCAGAGCTTGAAAGGAAGCTAATAAAAGCTAGAAAGCCATATCTTCATGAATCTCGACATCAGCATGCTATGAGAAGGGCAAGGGGTACTGGAGGACGTTTTGCAAAGAAATCTGAAGTTGAGGGCTCAAACAACTCAAGAAAGGACAAAGATAATTCTCGTCCAGTTTCATCTGGTTCTGAACCCTTACCTTCTGACTCGACTGAAACTTGGAATTCTCCCAATGTGCAACATGATGCAAGAGGCACGCATGACAAATACGAAGTACCCAAATACGAGAATGTTAGTGGCTCCTACCATAATCACAATGGTCTGCAATCTTCAACCTATCATTTGCACTCAGGTGAAAGAATTGACGAAGGGGACTGTTCTGGTCAGCAGCGAGGAAGCATGTCTTCCGGGCACGCGGCACAGAGGCGCCTCACAATTCAGTAG 1017 0.4641 MQSKSETANRLRSDAHSLQPSSVYSEPWWRGVGYSSVPQVMAGANASNSSSLECPNGDSESNDEGHSLSNSGMNEEDDDAAKDSQPADPNQSGNNGQEHQGIQHAAPSMREEGLTQAPQLELVGHSIACATNPFQDPYYGGMMATYGSQPLGYAPFLGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKARKPYLHESRHQHAMRRARGTGGRFAKKSEVEGSNNSRKDKDNSRPVSSGSEPLPSDSTETWNSPNVQHDARGTHDKYEVPKYENVSGSYHNHNGLQSSTYHLHSGERIDEGDCSGQQRGSMSSGHAAQRRLTIQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0889 338 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Aev01g0889 338 MobiDBLite consensus disorder prediction 206 225 - -
Aev01g0889 338 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Aev01g0889 338 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Aev01g0889 338 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Aev01g0889 338 Gene3D - 171 233 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 319 338 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 206 281 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 44 112 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 85 102 - -
Aev01g0889 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Aev01g0889 338 MobiDBLite consensus disorder prediction 1 24 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 226 249 - -
Aev01g0889 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 328 IPR001289 GO:0003700|GO:0006355
Aev01g0889 338 MobiDBLite consensus disorder prediction 44 69 - -
Aev01g0889 338 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 328 - -
Aev01g0889 338 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Aev01g0889 338 MobiDBLite consensus disorder prediction 70 84 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 250 272 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 309 338 - -
Aev01g0889 338 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0889 Aev-Chr1 8657670 8660655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0889 1 267 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.982 8.41e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aev01g0889 CBFB_NFYA 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0889 K08064 - gmx:100808378 536.569