Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0784 ATGCTTGTCGCAAGCGAAGGACCGGTCACTGACGAGCTCTTCCTGCTCGTTGGCGTTCATCACGCAGAAAAGGGCATAAAAGACTTTTTACACTCACCGTCGGGAATTCGCTCTAGCAGAGTATCCCCAAGACATGCTGGTGGTGGTGGTGGTGGTGGTGATGGTGATAGTGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGATGGTGCGCACAACAAAGTTCCCAAATTCAAAAAAGCATTGCTTTCTGGACAGCGCACAACAAAGTTCCCAAATTCAAAGTGCATAAAGATTCAGCAAAACAAAACAAACCCACAGAAACAAAACAAATTGTTCCCCAAAACCATTCCAATTTCCATGTCACTGAACGCTCTCAAGGAATCGCTGAAATCTTGCAAAACCCAACAACCACCACCCTCAACTTCTTCTTCTTCTTCTTCTTCTTCTTCACAATCCATTTCGCAAAGCCAAACTCGCCCCAGTTCGATTCTCCTTCACGATTTCAACACCGCATTCCTTAGAAAACCCCCAAAATCCTCTCTTTCCCAGCAGCTTCGCCGTCTGAACGAGGACTCATTTTCTTCCCCGCCGGCGCCACTGCTTCGGCCACACAACAAGCGACAAAAGGAAGAAGAGAAAACAGGTCAACGTATCAATGGAGAAGAAGAGAAGCAAGTAGCAGAAGATGGAGAAGATGACGAGGAGGGGGAGGAGGAGGAGAAAGAAGTGAAGAGGGGTAAATTCGGTATGGCAAAAATTTCCCAGTTTCATTTTGATCACACTGGACCTTTTGAGCCTCTGGTTTTGTCTTCAGATGGAGAAGTTCCAGTTATTCAGGTTCCTGCATCTATAAACTGTAGACTGCTCAAGCATCAAAGAGTGGGAGTGAGGTTCCTGTATGGTTTGTACAAGAATAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTACTGCCATCTTTGGTAAAGAAAGGGACTCGATGCTTGGTGAAATTCGGGAAGAGAATAGAGACCCCGTGTTAATAATTTGCCCAACTTCTGTTATTCACAATTGGGAGAGAGAATTCTCCAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAATCGGGCCCTGATACATGATAAATTGGAAGCGAATGGAGTGGAGATACTTATTACAAGCTTTGATACTTATAGGATTCATGGAACTTCTTTGTCAGATATTAAATGGGGCCTTGTGATTGTTGATGAGGCTCATCGGCTTAAGAATGAGAAATCAAAACTCTACAAAGCATGTTTAGAAATTAAAACCCTTAGACGTTATGGTCTTACTGGGACCATAATGCAAAATAAGATTATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCCGGATCGCTTGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCGCTTAAGCATGGCCAGAGATCAACTGCTCCAGATAGGTTTGTCCAAATTGCTAACAAGAGAAAACAACACCTTGTGATGGTCCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGCGATTTGCAAAAACGTGTTTACAAGCGAATGTTACAGCTTCCTGACATTGAATGCCTTATAAATAAGGACCTGCCATGTAGTTGTGGTAGTCCTCTTTCCCAAGTTGAATGTTGTAAGAGGATAGTGCCAAATGGAATTATTTGGCCTTACCTTCACAGAGATAATCCCGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTACCATGCCTTGTCAAGCTTCAACAGATAAGTAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAGCAAAGCAAAGATGCTGAATTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAACATTCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGTGCACTTGAAAAACTTCTATTCTCATGGATTTCACACAGTGATAAAGTTCTGCTGTTTAGCTATTCAGTAAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGATATTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGTCAGTCTCTAGTCGATGATTTCAACTCAAGTCCAAGCAAACAGGTATTCCTAATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTTATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGTCAGAAGCGGCATGTTATGGTGTTCCGTCTTCTTGCAGCTGGTTCGCTTGAAGAACTTGTTTATTCTCGCCAGGTGTACAAGCAGCAACTCTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGGTATTTTGAAGGCGTACAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTAGCAATTTATTTCGAGATTTATCTGATAAGCTATTTACTAGTGAGATCATTGAATTGCATGAGACGGGAAAAGAACATGTTCATAAATTAGAGCAACAGGAAAGAGTAAATCTGTCAGAAGAAATAAATTCCTTAGTATCGGAGTCTGATACTGAAATATGTACTGAATCTGTGAGGGATGATGCAAGTAAACCAGATTTTGAAGACCTTGGGATCGTCTATGCTCATCGCAATGAAGACATTGTCAACTTAGGACCTGGGATTCAACGGAAGATGGATTCCAGCATCCCTTCAAGTGATAATAGCTTAAGAAGGCCAATCATATCTCCAATCCACCAAAGAAAGAAACCAGATTCTGTTACTAAAAACCAGAATGCTTCTTTTATTGATGAAAGGAAGAGAATCCAGTATAGCCTCCTTGCCAAGTCTATGGCCATGGAGGAGCTTGGATTTAGCAGATGGTTACTATCAGCAACCCCACTGGAGAGAGAAAAAATGCTTCAAGACTACAAGAAGAAGAAAACGAAGATACCTAATGGTTGA 3090 0.4265 MLVASEGPVTDELFLLVGVHHAEKGIKDFLHSPSGIRSSRVSPRHAGGGGGGGDGDSGGGGGDGGGGDGAHNKVPKFKKALLSGQRTTKFPNSKCIKIQQNKTNPQKQNKLFPKTIPISMSLNALKESLKSCKTQQPPPSTSSSSSSSSSQSISQSQTRPSSILLHDFNTAFLRKPPKSSLSQQLRRLNEDSFSSPPAPLLRPHNKRQKEEEKTGQRINGEEEKQVAEDGEDDEEGEEEEKEVKRGKFGMAKISQFHFDHTGPFEPLVLSSDGEVPVIQVPASINCRLLKHQRVGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLTAIFGKERDSMLGEIREENRDPVLIICPTSVIHNWEREFSKWSNFSVSIYHGANRALIHDKLEANGVEILITSFDTYRIHGTSLSDIKWGLVIVDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVMVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYKRMLQLPDIECLINKDLPCSCGSPLSQVECCKRIVPNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNIQSESFMDLSDVKHCGKMRALEKLLFSWISHSDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVMVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHETGKEHVHKLEQQERVNLSEEINSLVSESDTEICTESVRDDASKPDFEDLGIVYAHRNEDIVNLGPGIQRKMDSSIPSSDNSLRRPIISPIHQRKKPDSVTKNQNASFIDERKRIQYSLLAKSMAMEELGFSRWLLSATPLEREKMLQDYKKKKTKIPNG* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0784 1029 Pfam Helicase conserved C-terminal domain 677 789 IPR001650 -
Aev01g0784 1029 MobiDBLite consensus disorder prediction 30 77 - -
Aev01g0784 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 842 IPR027417 -
Aev01g0784 1029 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 417 426 IPR002464 -
Aev01g0784 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 521 IPR027417 -
Aev01g0784 1029 MobiDBLite consensus disorder prediction 175 191 - -
Aev01g0784 1029 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 471 IPR014001 -
Aev01g0784 1029 MobiDBLite consensus disorder prediction 203 224 - -
Aev01g0784 1029 CDD SF2_C_SNF 671 800 - -
Aev01g0784 1029 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 143 1013 - -
Aev01g0784 1029 SMART helicmild6 706 789 IPR001650 -
Aev01g0784 1029 MobiDBLite consensus disorder prediction 175 246 - -
Aev01g0784 1029 Gene3D - 533 904 IPR027417 -
Aev01g0784 1029 MobiDBLite consensus disorder prediction 91 113 - -
Aev01g0784 1029 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 680 833 IPR001650 -
Aev01g0784 1029 MobiDBLite consensus disorder prediction 129 162 - -
Aev01g0784 1029 MobiDBLite consensus disorder prediction 225 239 - -
Aev01g0784 1029 PANTHER SNF2/RAD54 FAMILY MEMBER 143 1013 - -
Aev01g0784 1029 SMART ultradead3 284 479 IPR014001 -
Aev01g0784 1029 Coils Coil 877 897 - -
Aev01g0784 1029 Pfam SNF2-related domain 305 560 IPR000330 GO:0005524|GO:0140658
Aev01g0784 1029 Gene3D - 267 520 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0784 Aev-Chr1 7498297 7518432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0784 693 819 RAD5 or RAD16-like Gene Family AT1G11100 36.220 1.07e-19 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev01g0784 SNF2_N 1.2e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0784 K20098 - gmx:100781003 1387.09