Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0760 ATGGAATCGGATCTTGGAAAGCTCTTCATTGGAGGAATATCTTGGGATACCGGTGAGGAACGTCTTAAGGAGTATTTTGGGAAGTATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCTCCACAGGCCGTGCACGAGGTTTCGGTTTCGTCGTCTTTTCTGATCCTGCTGTCGCGGAAAGGGTCATTGTGGATAAGCACTTAATCGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCACTCTATAAATAGGCAGTCTGGTAGTGCAAATGCATCTCCTGGCCCTGGTCGGACAAAGAAGATTTTCGTTGGGGGTTTACCATCAACTATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACCGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTTTGATTCGGAAGAAGCTGTGGATAGAGTTCTGTATAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGTCCCAGCCGGAGCCCATTGATAGGATATAACTACGGTTTGAATAGGGCCAGTAGCTACCTAAACAGTTTTGCTCAGGGTTATAGTATGAGTCCAGTAGGAGGATATGGAGTCAGGATGGATGGTAGGTATAGTCCACTTACTAGTGGTAGAAGTGGTTATACTCCATTTGGCAACACTGGTTATGGAATGGGTGTAAATTTGGATTCAGGATTGAGCCCAGGCTATGGAGCAACATCTAATTTTGGAAGCAATTTAGGATATGGTCGAATAATTAGTCCTTTCTACAGTGGAAACTCGAGCAGATATACCACTCCTATAGGCTACAGTGGGGGCAATGGCAGAGGTGATTCGCTTATGAACTCAACTTCTCGGAATGTCTGGGGAAACGGGGGCCTGAGTAATGCCAATAACCCTGTCAGTCCTGGTTCTTTCTTGGGATCTGGAAATGGGAACTTTGGTGTTTCAATTGGAAATAGTGGCACTAATTGGGGTCCATCCATTCCAGCCCAAGGTGGAGGAGGGGTTGCTTCTGGCTATGCTACTGGGAGTAACGTTTATGAAGGTGGAGATAGCAGTTTTGGATTAGGCTCCGGAGGGTATGGAAGAAACAACAGTACCGGTGTGGCTCCATCCTCTACCTTTTCCGCACCAAGTGGTAATTATGAAGGATCGTATGGGGACTTGTACCGCAGTGGCAGTGGTTCAGTTTACAATGACACTGCTTGGCGTTCTGCTGCTTCTGAGATAGATGGTTCTGGGTCATTTGGTTATGATCTTGGTGGCATAGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCCTAG 1443 0.4532 MESDLGKLFIGGISWDTGEERLKEYFGKYGEVIEAVIMRDRSTGRARGFGFVVFSDPAVAERVIVDKHLIDGRTVEAKKAVPRDDQHSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASSYLNSFAQGYSMSPVGGYGVRMDGRYSPLTSGRSGYTPFGNTGYGMGVNLDSGLSPGYGATSNFGSNLGYGRIISPFYSGNSSRYTTPIGYSGGNGRGDSLMNSTSRNVWGNGGLSNANNPVSPGSFLGSGNGNFGVSIGNSGTNWGPSIPAQGGGGVASGYATGSNVYEGGDSSFGLGSGGYGRNNSTGVAPSSTFSAPSGNYEGSYGDLYRSGSGSVYNDTAWRSAASEIDGSGSFGYDLGGIASDDPVKSSEGYIGNYNVTSRQSNRGIAA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0760 480 SUPERFAMILY RNA-binding domain, RBD 105 256 IPR035979 GO:0003676
Aev01g0760 480 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Aev01g0760 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
Aev01g0760 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Aev01g0760 480 Gene3D - 6 88 IPR012677 -
Aev01g0760 480 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Aev01g0760 480 Gene3D - 105 185 IPR012677 -
Aev01g0760 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Aev01g0760 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Aev01g0760 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Aev01g0760 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aev01g0760 480 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 480 - -
Aev01g0760 480 MobiDBLite consensus disorder prediction 77 105 - -
Aev01g0760 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aev01g0760 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0760 Aev-Chr1 7237114 7239762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0760 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 25.843 2.87e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0760 K14411 - gmx:100805131 858.981