Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0680 ATGGTTCAAATAAAAAGGATATTACATCAATGGAAGCATCCATTTGATGATTATCCTTTTGAGGGATTTTTGTTTGGTTCATGGCAACCTGTGAAGAAAATAAAAATTGAGTCAGGAACTATGTCCTTATATTTTAAGGATAACCATTGTTTGAAAATGGAGAAAGGACCTTCTACAGACATTCGATTAAGATCACGAAAAGCAACTTCATCAGATTGTTCTTGCTTTTTACGACCTGGGATTGATATATGTGTTTTGTCAGTGCCTAAATGTGGCAATGATCCTGATGAATCTTCTCCTCAACCTGTTTCATTCAATATAAGATCTGTTGACAACATGATTGTGTATCAAGTTTTGGGAGGCTATGAAAGTAATAACGCCTCAACATCAAACAACTTTGCTTTTATAAATGTTATCAACTTTAGAGTAGACCAAAATGGTACAGTAGTACCATTTGTTACTCAAGTAGATACATCTAGAACCAAGAAAACTGGCTATGCAAAAGATCATGTTTCCCCTAAAGATGAAGTACATCCCTCTTGTAATGTCGAAGGATTAAGGCGTTCCATGCGACGCCATGTAGAGCTGGAGCGTTACCATGATTGTGATACTTCCAAGTTTAAAAGTGTCATTTCTATTAGAGCTCGGCCATACAAGGTAAGAACAGGGAATGGTGATGATGATGATAAGCCAGTACCACTAGCATCACAGTGTGCCTTCCAAGTGGAGAATTGTTCTAGAAAAGATGTTCTTAATAACAATATCAAAAAGTGGAATTCTCGACAGGGGATGGACATTCGACCAAAACTCGAATTAGAAAATAATACTCAACTTTCTGTCATTTATCCTGGTGAAGGGGATGTAGATGATGAAGAAGAGGTTGGTGCGTTCTCTTCCTATCGTGCTTATGGCACCTCTAAGAAGTGTAAGAAGAGCTCATCTAGTGTAGATGATATGGACATTGAACCTAGATGGGAAGGGAGAAACCCCAAAAATAAAGATAAAGGAAAAAGATATCGGTCAACACCTTCAAGAAGTAGAAATAAAGATGATGAAGAAAGAGCTTATAAAGATAGAACCGTAAACTCTGCTATCTACAAGGAAATGATAGATTCATACATGAATAATAATAGAATATCAAACAAGGAAGAACCAAGCTTAAGGGATCAGTGGATTGAAACAAGCAACTTTGAGCTGAAAAATGGAGAAGGAACATCTCACATGAAGGAAGATGCAGAAATGTCTGAAATAGATAAGTTGTGGAAAGAAATGGATTCATCACTAACATCAATTTATCTTCAAGAAGATGTTGTTCATGGCGATACCAAAAAAATATGTGATCATGACAATAAATTGGATGAAGAGATTGGAATCTACTGTCTTAGATGTGGTGTTGTGAGCGTCGACATTACGAGTATCACCCCAGACTTTTTGCCACGCGTAAGAAGGCGCCATCAAGAAGAGGAGGAGGAAGAGAAGAAGAAACAAAATGGAGAACAAGAATCATATAAGACTAATCACAAACTTGTCAAGGCTCAAGATTCTACCAATGTGCCTATACCTCAAGATTCTGCCATTGAACCTATACCTCAAGAAAATACTAAAATTTGGGATTTGATTCCGGGGCTAAAAGAAAAGATGCATGTCCACCAGAGGAGAGCCTTTGAATTTCTTTGGCAAAACATTGCAGGGTCTATAGAACCAACACAAATGGAAGCAGAATCCAACAACAGTGGTGGTTGTGTGATATCTCATTGTCCAGGAGCAGGAAACACTTTCCTCATCATCGCCTTTCTTACAAGCTTCTTGAAGCTATTTCCAGGGAAGAGACCATTGGTGTTAGCTCCAAAAACCACATTGTACACTTGGCATAAGGAGTTTATTAAATGGGAGGTTCCTATTCCGGTGTATTTAATTCATGGACATAGATCACATAGAGAGTTGAAGAAGACAGAGTCCATTCCCGGTGTTCCAAAATCAACAAATGATGTAAATCATGCTTTGGATTGTTTAGAAAAGATACAAAAGTGGCGTGATCACCCTAGTGTTCTAGTTATGGGATACACTTCTTTTTTAGCAATGATGAGAGATAATTCAAAGTATAATCACATGAAGTACATGGCAAAAGAGATAAGGGAGAGCCCCGGGTTGCTGATACTTGACGAAGGGCACAATCCAAGGAGTACCAAATCGAAGCTTAGGAAAGTTCTGATGACAGTAGAGACAGAACACAGAGTGCTACTATCAGGTACATTATTTCAAAATAATTTTTGTGAATACTTCAACACATTGTGCTTGGCGAGGCCGAAGTTTATCCAAGAAGTGTTGAATTTACTAGACACCAACTACGATAAGCTCAAGGTAGTAGAGAAAGCCTCACATTTGGTTGAGGCGCGCGCTCGGAAGTTCTTCCTAGACAAAATTGGCAAGATAATTCAGTCAAAGGATGAGGAATCTTTCCTCAGTGAAGCGAGTATACAAAGTATGAACTTGTTGAAAAAACTCACAAGTGGTTTTATTGATGTTTATGAAGGTGGAAACCATGACACACTCCCAGGTTTGAAAATTTATACTTTGTTGATGAACACAACTGAAGTACAGCAGAGGATTCTAAAAAAACTTCACAAGAAAATGGCTAAGTATACTAGTTACCCCTTGGAGATAGAGCTTCTGATAACACTTGGATCAATACATCCATGGCTGATAACAACAACAAAATGTGCTTCTAAGTTCTTCTCTTATGGGCAATTAATGGAATTGAACAATTACAGGTATGATTTAAGGATAGGGACAAAAGTCAGATTTATTATGAGCCTTGTCCACAGAGTTTTCAAGGAGGAGAAAGTTCTCATCTTCTGCCACAACATTGCACCTATCAAGATGCTATTGGAACACTTTGACATGTGTTTCAAGTGGAAAAAAGACAAAGAGATTCTGGTGATAACCGGTGCACTTGAACTCTTTGAAAGAGGGGAAGTGATAGATAAGTTTGAAGACCCTCATGGTGCATCCAAGGTGTTAATTGCTTCGATCACGGCCTGCGCCGAAGGGATTAGTCTTACTGCAGCATCAAGTGTTATTATGTTGGATATTGAGTGGAACCCATCAAAGACTAAGCAAGCTATTGCAAGGGCTTTTAGGCCTGGCCAGCAAAAAATGGTGTATGTGTATCAGTTAACTGTTATGGAGTCAATTGAGGAAGATAAGAGTAAGATAACAACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAATGAGGAAGTTGTGGAACCTTCACAATCTCAAGCACAAAACATTGAGGATGATGTGCTTAGGGTGATGGTTGAAGAGGACAAGTCTAAGGTATTCCATAAGATCATGACATTGCACATGGAAAAGCCTACAAACTTACCATGA 3396 0.3843 MVQIKRILHQWKHPFDDYPFEGFLFGSWQPVKKIKIESGTMSLYFKDNHCLKMEKGPSTDIRLRSRKATSSDCSCFLRPGIDICVLSVPKCGNDPDESSPQPVSFNIRSVDNMIVYQVLGGYESNNASTSNNFAFINVINFRVDQNGTVVPFVTQVDTSRTKKTGYAKDHVSPKDEVHPSCNVEGLRRSMRRHVELERYHDCDTSKFKSVISIRARPYKVRTGNGDDDDKPVPLASQCAFQVENCSRKDVLNNNIKKWNSRQGMDIRPKLELENNTQLSVIYPGEGDVDDEEEVGAFSSYRAYGTSKKCKKSSSSVDDMDIEPRWEGRNPKNKDKGKRYRSTPSRSRNKDDEERAYKDRTVNSAIYKEMIDSYMNNNRISNKEEPSLRDQWIETSNFELKNGEGTSHMKEDAEMSEIDKLWKEMDSSLTSIYLQEDVVHGDTKKICDHDNKLDEEIGIYCLRCGVVSVDITSITPDFLPRVRRRHQEEEEEEKKKQNGEQESYKTNHKLVKAQDSTNVPIPQDSAIEPIPQENTKIWDLIPGLKEKMHVHQRRAFEFLWQNIAGSIEPTQMEAESNNSGGCVISHCPGAGNTFLIIAFLTSFLKLFPGKRPLVLAPKTTLYTWHKEFIKWEVPIPVYLIHGHRSHRELKKTESIPGVPKSTNDVNHALDCLEKIQKWRDHPSVLVMGYTSFLAMMRDNSKYNHMKYMAKEIRESPGLLILDEGHNPRSTKSKLRKVLMTVETEHRVLLSGTLFQNNFCEYFNTLCLARPKFIQEVLNLLDTNYDKLKVVEKASHLVEARARKFFLDKIGKIIQSKDEESFLSEASIQSMNLLKKLTSGFIDVYEGGNHDTLPGLKIYTLLMNTTEVQQRILKKLHKKMAKYTSYPLEIELLITLGSIHPWLITTTKCASKFFSYGQLMELNNYRYDLRIGTKVRFIMSLVHRVFKEEKVLIFCHNIAPIKMLLEHFDMCFKWKKDKEILVITGALELFERGEVIDKFEDPHGASKVLIASITACAEGISLTAASSVIMLDIEWNPSKTKQAIARAFRPGQQKMVYVYQLTVMESIEEDKSKITTWKEWVSNMIFNEEVVEPSQSQAQNIEDDVLRVMVEEDKSKVFHKIMTLHMEKPTNLP* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0680 1131 Gene3D - 520 802 IPR038718 -
Aev01g0680 1131 SMART helicmild6 964 1049 IPR001650 -
Aev01g0680 1131 SMART ultradead3 543 775 IPR014001 -
Aev01g0680 1131 MobiDBLite consensus disorder prediction 308 358 - -
Aev01g0680 1131 MobiDBLite consensus disorder prediction 311 358 - -
Aev01g0680 1131 CDD SF2_C_SNF 929 1059 - -
Aev01g0680 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 772 IPR027417 -
Aev01g0680 1131 Pfam SNF2-related domain 545 778 IPR000330 GO:0005524|GO:0140658
Aev01g0680 1131 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 572 770 IPR014001 -
Aev01g0680 1131 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 103 IPR044567 GO:0080188
Aev01g0680 1131 Gene3D - 852 1128 IPR027417 -
Aev01g0680 1131 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 935 1083 IPR001650 -
Aev01g0680 1131 MobiDBLite consensus disorder prediction 481 512 - -
Aev01g0680 1131 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 103 - -
Aev01g0680 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 1093 IPR027417 -
Aev01g0680 1131 Coils Coil 486 506 - -
Aev01g0680 1131 Pfam Helicase conserved C-terminal domain 932 1048 IPR001650 -
Aev01g0680 1131 MobiDBLite consensus disorder prediction 481 508 - -
Aev01g0680 1131 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 98 1121 IPR044567 GO:0080188
Aev01g0680 1131 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 98 1121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0680 Aev-Chr1 6259294 6264082 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0680 978 1103 RAD5 or RAD16-like Gene Family AT5G05130 34.646 1.53e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev01g0680 SNF2_N 1.9e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0680 K10875 - gmx:100811703 1016.53