Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0492 ATGGGTGCTCCTAAGCAGAAATGGACTGCCGAAGAAGAAGCTGCACTGAAAGCCGGAGTAGTCAAACACGGGGCAGGAAAATGGCGCACTATACTTACAGATCCAGAATTCAGTTCCATTTTGCGCATGAGGTCCAATGTAGATCTCAAGGATAAATGGCGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAAGCGAAGCTTGCCCTTAAAAGGAATCTAGCCCCTCAAATTGACAATAACCGTGTGGCCTTGAGTACAGTAGTTCAACATGCAGAAGTTCTTGATACTAAGCCTCTAGCAGTTTCTGGTCCATCATTGCCATCTCCTAAGTCAAAAGAACAAATATCAAGGTTGGATAATCTTATATTAGAGGCTATTGTTAATCTGAAGCAGCCGAGGGGTTCTGACAGGAGTGATATTGCTTCTTACATAGAGGAGAAATATCAGTCGCAATCAAACCTTGTAAAGTTACTTCCAACAAGACTGAAGCATATGGTGGCTAGTGGCAAAATAATCAAGGTACAGCAGAAGTACAAGATTGCACTAAGTACAGCAGCCTCTGAGAAAAGAAGATCCTTTCCCTTGTTACTCCTGGAAGGGAGGTCAAAAGAGTCTCCAGAAACAGAGAAGAGTGAAGGCGTCAGCATCCTTTCAAGATCTCAAGTTGATGCAGAGATATTGAAAGCGAAGGGCATGACAGCTCAAGAGGCTGCTGCGGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAGGCGGAGGCTGCCCAAGTGTTTGCAAAAGCAGCAATGAGGGCACTAAAATGCAAAACATTTCATATCTGGTAG 885 0.4576 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLAPQIDNNRVALSTVVQHAEVLDTKPLAVSGPSLPSPKSKEQISRLDNLILEAIVNLKQPRGSDRSDIASYIEEKYQSQSNLVKLLPTRLKHMVASGKIIKVQQKYKIALSTAASEKRRSFPLLLLEGRSKESPETEKSEGVSILSRSQVDAEILKAKGMTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMRALKCKTFHIW* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0492 294 Gene3D - 113 196 IPR036388 -
Aev01g0492 294 PANTHER MYB TRANSCRIPTION FACTOR 1 293 - -
Aev01g0492 294 SMART h15plus2 103 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev01g0492 294 Coils Coil 241 278 - -
Aev01g0492 294 CDD SANT_TRF 6 57 - -
Aev01g0492 294 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Aev01g0492 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev01g0492 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Aev01g0492 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Aev01g0492 294 SUPERFAMILY "Winged helix" DNA-binding domain 116 194 IPR036390 -
Aev01g0492 294 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aev01g0492 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Aev01g0492 294 Gene3D - 2 59 - -
Aev01g0492 294 SMART sant 4 59 IPR001005 -
Aev01g0492 294 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0492 Aev-Chr1 4448124 4451292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0492 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 54.849 4.68e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aev01g0492 Linker_histone 1.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0492 K09422 - gmx:100779583 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0735 05 5124453 5126802 Aev01g0492 01 4448124 4451292 PCT