Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0470 ATGGGTCTTCATCATCAAGATCCTAATAATAATAACAACTCATCATCAGAGCTTGAACTTGTTCTAGGCCTATCCTTGAACACTAGTAGTTTCACTCCATCACCACCACCACCATCTTCTAACAAGGCTATTGATGAAGAGCCATCACTAACTTTGGGTCTCTACGATCAACACCACCTGCTCAAATTAGTCCAAGTCCCCACAACCAAGATTATTAATGATTTGTGTGCATCGCAAAATTCGCCTCACAGCGTTGTTTCCTCTTTCTCGAGTGGGAGGGTGGCAGTGAAGAGGGAAATAAGCAGCGAGGAAGTCGACGCTACGGAGAGGCTTTCGTCCAGACTTATTAGCGACGAAGATGAAGACGGAACAACAACCGCCAGGAAGAAGCTCAGGCTCACCAAAGACCAGTCTGCTCTCCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCGAAACAAAAGCAAGCTTTGGCCAGGCAGTTAAATCTACGGCCACGACAGGTTGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTAAAGCAAACGGAGGTAGACTGTGAGTTTCTAAAGAAGTGTTGTGAAACGTTGACGGATGAGAATAGGAGGTTACAAAAGGAGCTTCAAGAGCTTAAAGCACTCAAACTTTCTCACCCTTTGTACATGCCTATGCCTGCTGCAACACTCACCATGTGCCCTTCATGTGAGAGGCTTAGTGCTCTTAATGCTGCCCCTTCCAATAACACCCCTTTCTCTTCCTTGGCCCCCAAGTCTCATCATCATCATCACTTCTACAACCCCTTCACCAATCCTTCCGCCGCATGTTGA 837 0.4671 MGLHHQDPNNNNNSSSELELVLGLSLNTSSFTPSPPPPSSNKAIDEEPSLTLGLYDQHHLLKLVQVPTTKIINDLCASQNSPHSVVSSFSSGRVAVKREISSEEVDATERLSSRLISDEDEDGTTTARKKLRLTKDQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSHPLYMPMPAATLTMCPSCERLSALNAAPSNNTPFSSLAPKSHHHHHFYNPFTNPSAAC* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0470 278 Coils Coil 190 220 - -
Aev01g0470 278 Pfam Homeobox associated leucine zipper 184 218 IPR003106 GO:0006355|GO:0043565
Aev01g0470 278 SMART HOX_1 126 188 IPR001356 GO:0003677
Aev01g0470 278 MobiDBLite consensus disorder prediction 107 127 - -
Aev01g0470 278 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Aev01g0470 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 18 278 - -
Aev01g0470 278 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Aev01g0470 278 CDD homeodomain 128 185 IPR001356 GO:0003677
Aev01g0470 278 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Aev01g0470 278 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Aev01g0470 278 Gene3D - 132 182 - -
Aev01g0470 278 PANTHER - 18 278 - -
Aev01g0470 278 SUPERFAMILY Homeodomain-like 120 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0470 Aev-Chr1 4184797 4187247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0470 13 278 Homeobox Transcription Factor Family AT4G37790 56.794 3.33e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aev01g0470 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0470 K09338 - gmx:100795135 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0757 05 5300449 5301916 Aev01g0470 01 4184797 4187247 PCT