Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0453 ATGCCAGTTCCACTTGCTCCTTATCCAACACCACCAGCTCCTTATACACCTCCAGCACAAGCAAATGGTGCACAGAGTCAACTAGTCTGTTCTGGATGCAGAAACCTTCTTCTCTATCCAGTTGGAGCTTCATCAGTGTGTTGTGCTGTTTGCAATGCAGTTACAGCAGTGCCACCTCCTGGCACAGAAATGGCGCAGTTAATTTGCGGCGGCTGCCATACTTTACTCATGTACATCCGCGGCGCGACGAGTGTACAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGTAACTGCAGGATGCTACTAATGTACCAATATGGAGCAAGATCTGTGAAATGTGCTGTTTGCAATTTTGTAACATCAGTAATTGGGGCCTCAGGAAGCACCACTGAGCAAAAGTTCAGCACTTGA 447 0.4698 MPVPLAPYPTPPAPYTPPAQANGAQSQLVCSGCRNLLLYPVGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVIGASGSTTEQKFST* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0453 148 SUPERFAMILY Multiheme cytochromes 29 128 IPR036280 -
Aev01g0453 148 PANTHER PROTEIN LOL1 1 145 - -
Aev01g0453 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Aev01g0453 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Aev01g0453 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
Aev01g0453 148 PANTHER PROTEIN LSD1 1 145 IPR040319 -
Aev01g0453 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Aev01g0453 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Aev01g0453 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0453 Aev-Chr1 3957073 3959300 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aev01g0453 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0453 - - qsu:112000975 249.21