Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0397 ATGGCGAACCCATCATCCTCTTCCTCCTCCTCCTCCCAATTCACCTACTCCTCCGATCCCTCGTACTTCCCCACCCCCTTCCACCTCCAACAACAACCCCCTTACGCCCCACCACCACGCCCTCCTCCTCCCTCCGCCGCCGCCGCCACCGCCGCTGCATACACCTACCCTCCTCAACCACTCCACCACCACCAATTCCAGCGCGACGCACAGCAACTCTTCCAGCGCGACGCTCAGACGATCACCCCCGAAGCCCTAGAGAGCGTGAAGGCCGCTATAGCGAGCAGCGACGTCGACCACAAGGCCGACGCAAAGCGGAAGGCCGTCCCCCGCCGCGCCGCCGGTCAGACGTGGGAAGATCCATCCCTCGCAGAGTGGCCGGAGAACGACCACCGCCTTTTCTGCGGCGACCTAGGGAACGAAGTGAACGACGACGTTTTGTCAAAGGCTTTCTCGCGGTTCCCTTCGTTCAACATGGCGAGGGTAGTTAGGGACAAGAGATCAGGGAAGACGAAAGGTTACGGATTCGTGAGCTTCGCAGATCCTTCGGATCTTGCCGTTGCGCTTAAGGAGATGAATGGAAAGTACGTTGGGAACAGACCTATTAAGCTTTGCAAGAGCAAGTGGAAAGAGAGAACCGATTTCGATGCCATGGATAAGCAGAAGAAGCACTCCAAGAAGAAGATGAAATCCTCGTCCAAGGTTGGAGTTTTGCATTACTGA 723 0.5754 MANPSSSSSSSSQFTYSSDPSYFPTPFHLQQQPPYAPPPRPPPPSAAAATAAAYTYPPQPLHHHQFQRDAQQLFQRDAQTITPEALESVKAAIASSDVDHKADAKRKAVPRRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDFDAMDKQKKHSKKKMKSSSKVGVLHY* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0397 240 Gene3D - 68 215 IPR012677 -
Aev01g0397 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 30 239 - -
Aev01g0397 240 MobiDBLite consensus disorder prediction 95 120 - -
Aev01g0397 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Aev01g0397 240 MobiDBLite consensus disorder prediction 95 113 - -
Aev01g0397 240 SUPERFAMILY RNA-binding domain, RBD 115 211 IPR035979 GO:0003676
Aev01g0397 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Aev01g0397 240 MobiDBLite consensus disorder prediction 1 28 - -
Aev01g0397 240 SMART rrm1_1 132 205 IPR000504 GO:0003723
Aev01g0397 240 MobiDBLite consensus disorder prediction 30 46 - -
Aev01g0397 240 MobiDBLite consensus disorder prediction 216 240 - -
Aev01g0397 240 PANTHER RNA-BINDING PROTEIN 42-LIKE 30 239 - -
Aev01g0397 240 MobiDBLite consensus disorder prediction 1 68 - -
Aev01g0397 240 CDD RRM_RBM42 125 207 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0397 Aev-Chr1 3347804 3348526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0397 81 211 Eukaryotic Initiation Factors Gene Family AT1G71770 25.735 5.79e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0397 K25079 - adu:107484659 323.939