Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0347 ATGGAGAAGCATAAATGCAAGCTCTGCTCAAGAACATTCTCCAATGGCAGAGCACTTGGTGGCCACATGAAAGCTCACCTAGCCACTTTACCCCTTCCTCCTCCTCCTCCTCCATACCCATCATCCTCATTCTCTTCTTCTTCTTCTTCTTCCTCAGAATCAGAAAAACAGAGTAACAGAGAAACAGAGCATAACAATAAGACTCTGATTTACGCCTTAAGAGAGAACCCCAAGAAGAGTTTCAAGCTCGCATCAGAAACAGAGACCGAATCGATGAATATTATGATGATGACGACGACTCGCCAACGATCCAAGCGTAACCGAAGCTACTTCATCACTCCGAACCTCAGCTTCGTTGCCGACCCCCCCGAACCTGTTCTTAGCTCTGTCTCCGACGGTTCTACCGAAGAACACGTTGCCTTGTGCCTCATGATGCTCTCTAGGGACACGTGGCAGCAGAAGAAGAAACAAGAATACGAAGAAGACGATGATGAGATCAAGAAGGTGAAGAAGAAGAAGAATCAGTGTGAGGGATGTGGGAAATCGTTTCGATCTTCGAGGGCATTGGGGAGTCACCGGAGCATATGCTGTCGCGGCGAACCGGGAACCGGTGGCGGCGGAGGAGAGAGGGTTTTCGAGTGCCCGTTCTGTTTGAAGGTGTTTGGTTCGGGTCAAGCGCTAGGAGGACACAAGAGATCTCATCTGATGGGAATTTCTGCAACTGATCATTCGACTTCAATTGTTAGCGATTCCGTTATGATAATGAAGAATTCGAATTCGAGAGAGAGATTCATAGATCTCAATTTGCCGGCACCGGTAGAAGATGACGGTGAACTCAGTGTTGTTTCTGATGTTTCCGATGCTTAA 867 0.4775 MEKHKCKLCSRTFSNGRALGGHMKAHLATLPLPPPPPPYPSSSFSSSSSSSSESEKQSNRETEHNNKTLIYALRENPKKSFKLASETETESMNIMMMTTTRQRSKRNRSYFITPNLSFVADPPEPVLSSVSDGSTEEHVALCLMMLSRDTWQQKKKQEYEEDDDEIKKVKKKKNQCEGCGKSFRSSRALGSHRSICCRGEPGTGGGGGERVFECPFCLKVFGSGQALGGHKRSHLMGISATDHSTSIVSDSVMIMKNSNSRERFIDLNLPAPVEDDGELSVVSDVSDA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0347 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 234 IPR013087 -
Aev01g0347 288 SUPERFAMILY beta-beta-alpha zinc fingers 208 235 IPR036236 -
Aev01g0347 288 SUPERFAMILY beta-beta-alpha zinc fingers 3 193 IPR036236 -
Aev01g0347 288 Pfam C2H2-type zinc finger 211 234 - -
Aev01g0347 288 Pfam C2H2-type zinc finger 4 28 - -
Aev01g0347 288 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Aev01g0347 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Aev01g0347 288 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 284 - -
Aev01g0347 288 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 284 IPR044303 GO:0006355
Aev01g0347 288 Pfam Zinc finger, C2H2 type 175 194 IPR013087 -
Aev01g0347 288 MobiDBLite consensus disorder prediction 27 65 - -
Aev01g0347 288 SMART c2h2final6 174 194 IPR013087 -
Aev01g0347 288 SMART c2h2final6 212 234 IPR013087 -
Aev01g0347 288 SMART c2h2final6 4 26 IPR013087 -
Aev01g0347 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Aev01g0347 288 Coils Coil 152 172 - -
Aev01g0347 288 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Aev01g0347 288 Gene3D Classic Zinc Finger 145 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0347 Aev-Chr1 2927958 2928824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0347 1 282 C2H2 Transcription Factor Family AT3G60580 33.962 4.92e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev01g0347 zf-C2H2_6 2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0347 - - gmx:100815124 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0873 05 6120449 6121426 Aev01g0347 01 2927958 2928824 PCT