Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0202 ATGAGATATCGTAGATCAGAAGTTGTTTCTGACTTGAGGTCATGGAATATTTTGGGCAGGCTTCTTTCTTCTTTTGCTAATGAGAAGATGAGTTCCTTCTCCATTACGCGGAAGAAGACACCATTCCAGAAGCATAGAGAGGAGGAGGAAGCAAAGAAGAAGAGAGCTGAAGATGAGACTGCTCGCTTGTATGCCGAATTTGTAGAGTCATTTCAAGGTGATACCACTCCTGGGTCAAAGGCTTTCGTTCGAGGAGGAACAATTAATCCCAATGATAGATTGAAGGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATACCACCTCCATTGGCAACCAAGGGGAAAGAACCTGAAAGAAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGCAAGTCAAGGAACATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGCTGAGGGAGAGACGGAATCAAGAACGTGAACAATGGCGTGATGGGCGCCACGGAGAACATTCTATTTCCAGTCGCTTTGATGAACTGCCTGATGATTTTGATCCGAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCCCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGCACTTTTGGAAGATTTGGACCTATTGCCAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGACGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTTTACGAGTACGAATTGAAAATAGGGTGGGGAAAGTCTGTTGCCCTCCCATCACAAGCCCTACCTGCACCCCCACCAGGGCATATGGCCATAAGGAGCAAGGAGGGCAGTACTGTGATCCTGTCCGGTCCATCAGGTCCGCCAGTGACTTCTGTGCCTAATCAGAACTCTGAACTGGTTCTTACTCCTAATATTCCTGATATAATGGTTACACCTCCTGAGGATGACCATCTAAGGCATGTAATTGATACAATGGCTTTATATGTTCTGGATGGAGGGTGTGCTTTTGAACAAGCTATCATGGAGAGGGGTCGTGGAAATCCTCTTTTCAGTTTCCTGTTCGTTCTTGGTTCAAAGGAACATACCTACTATGTTTGGAGACTGTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCCCATTACCAATAGCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGGGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTGACGGAATCATTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGACTCATGCTTGTCTCTGATATACTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCTGCATATCGCACCAAGTTTGAGGCCACATTACCTGACATTATGGAAAGTTTTAATGACTTGTACCGTAGCATAATGGGACGTATTACTGCTGAAGCCCTGAAGGAACGAGTATTGAAAGTTCTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTACGAGCCACTTTCCTTAGATCTGGGAACTCTGGTGTCATACCATTCCACTCCATATGTGGCGACGCACCTGAGATTGAGCAGAAGATCACTTCTGAAGATACGGTTGTTGGTGGCAAGACCAACCAAGATGCGGCATTGGCAATGGGTCGAGGAGCTGCAACGAAGGAGCTTATGAGTCTTCCTTTTGCTGAGCTAGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGGGGTTATGAACTAGATGACGAACTGAAATATGCCCAAAACCAAGGAAATGCAGGTAAGTATTCAAGTAGTCAACGAGAAACAAGTGCTGAGCCTGAAGCAGTGGGATTATCTGGATGGAACCACTATGAGGATGAAGATTTGCCGCCACAGGGCAAAGGGTCTGCACCATTAACTTCAACCCTTCCTATCCCACAGCCTGAACTTAAAGCCTTCACAAAAAAGGAGAAGAATGATCCAGTTTTACCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGACGATGAGCAAAGGAGAAGTGGAAAGAATCTTGGGCTAAGCTACTCATCCTCTGGCAGTGAAAATGTGGGTGATGGTCTCACTAAAGCTGATGAACAGGAATCTGCTGCGGATACAAGCATTTCAGCACATGCTGAGAGCCAAATGAATGAAGAGCAAAGGCAAAAGTTGAGACGCTTGGAGGTCGCTTTGATCGAATATCGTGAGTCTCTTGAAGAGAAGGGAATTAAAAATTTGGAGGAGATCGAGAAGAAAGTCGCAGTGCACCGTAAACGGCTGCAGTCAGAGTATGGGTTATCAGATTCTGGTGAAGATGGTCAAGGCAATAGAAGAACATCTGCAGAGAGGAGGGATAGGCACGACGTCTCAAGGAAACGGCACCGCAGCCGCAGTCCGAGCCATAGTCCACAACAAAGGTTATCAAGCAGAGACAGAGATAGAGAACATGATTTCGAAAGGGACCGTGACAGGCAAAGAGATAGAAGTTATGATTTGGATAGTGATAGAGGAAGGGACCGGCACCGGGAAAAGAGTGGCAGCCGAGAGAGGGACGACCATGATAAGGATAGAGGCGGCAGGGATAGGGACCGGAGAAGACGGGCCAAATAA 3006 0.4551 MRYRRSEVVSDLRSWNILGRLLSSFANEKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKAFVRGGTINPNDRLKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKHEQELRERRNQEREQWRDGRHGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPNQNSELVLTPNIPDIMVTPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFSFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPIAKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDAPEIEQKITSEDTVVGGKTNQDAALAMGRGAATKELMSLPFAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQGNAGKYSSSQRETSAEPEAVGLSGWNHYEDEDLPPQGKGSAPLTSTLPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQRRSGKNLGLSYSSSGSENVGDGLTKADEQESAADTSISAHAESQMNEEQRQKLRRLEVALIEYRESLEEKGIKNLEEIEKKVAVHRKRLQSEYGLSDSGEDGQGNRRTSAERRDRHDVSRKRHRSRSPSHSPQQRLSSRDRDREHDFERDRDRQRDRSYDLDSDRGRDRHREKSGSRERDDHDKDRGGRDRDRRRRAK* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0202 1001 PANTHER - 32 996 - -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 40 64 - -
Aev01g0202 1001 ProSiteProfiles CID domain profile. 472 617 IPR006569 -
Aev01g0202 1001 CDD RRM_SR140 214 297 IPR035009 -
Aev01g0202 1001 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 296 IPR000504 GO:0003723
Aev01g0202 1001 MobiDBLite consensus disorder prediction 808 823 - -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 444 475 - -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 832 847 - -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 938 995 - -
Aev01g0202 1001 Pfam CID domain 479 607 IPR006569 -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 90 109 - -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 775 807 - -
Aev01g0202 1001 Coils Coil 46 66 - -
Aev01g0202 1001 Gene3D - 472 619 IPR008942 -
Aev01g0202 1001 SMART surpneu2 362 416 IPR000061 GO:0003723|GO:0006396
Aev01g0202 1001 MobiDBLite consensus disorder prediction 128 198 - -
Aev01g0202 1001 Pfam cwf21 domain 849 895 IPR013170 -
Aev01g0202 1001 SUPERFAMILY RNA-binding domain, RBD 208 303 IPR035979 GO:0003676
Aev01g0202 1001 Gene3D - 848 899 - -
Aev01g0202 1001 SUPERFAMILY ENTH/VHS domain 476 614 IPR008942 -
Aev01g0202 1001 Pfam Surp module 362 414 IPR000061 GO:0003723|GO:0006396
Aev01g0202 1001 PANTHER RNA PROCESSING PROTEIN LD23810P 32 996 - -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 446 475 - -
Aev01g0202 1001 SUPERFAMILY Surp module (SWAP domain) 338 419 IPR035967 GO:0003723|GO:0006396
Aev01g0202 1001 Gene3D Surp module 350 419 IPR035967 GO:0003723|GO:0006396
Aev01g0202 1001 Coils Coil 477 497 - -
Aev01g0202 1001 ProSiteProfiles SURP motif repeat profile. 364 407 IPR000061 GO:0003723|GO:0006396
Aev01g0202 1001 MobiDBLite consensus disorder prediction 745 854 - -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 37 210 - -
Aev01g0202 1001 SMART 558neu5 479 614 IPR006569 -
Aev01g0202 1001 Gene3D - 126 298 IPR012677 -
Aev01g0202 1001 SMART rrm1_1 216 292 IPR000504 GO:0003723
Aev01g0202 1001 ProSiteProfiles SAP motif profile. 666 700 IPR003034 -
Aev01g0202 1001 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 289 IPR000504 GO:0003723
Aev01g0202 1001 SMART cwf21_2 848 897 IPR013170 -
Aev01g0202 1001 MobiDBLite consensus disorder prediction 892 1001 - -
Aev01g0202 1001 Coils Coil 849 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0202 Aev-Chr1 1590084 1598022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0202 212 292 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.87e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0202 K12842 - gmx:100776093 1637.08