Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0191 ATGGCGGAAGAGAGGTTCACGGGCGTTGTTCAGTGGTTCAACAACACCAAGGGTTTCGGTTTCATCAAACCTGATGATGGTGGCGAGGACCTCTTCGTCCATCAGTCGTCCATCAGATCCGATGGATACCGTAGCCTCTACGACGGCGATCGCGTCCAGTTCTCCATCGCTGACGGCGACAACCACAAAACCAAGGCCGTCGACGTTACTGCCCCTGACGGAAACCCACTCCAATCACGTAAGGAAAATTTCTCCGTTGGTCGCGGTGGTGGAGCCGGATTCGGAGGTGGTTGGAGGCGCAACGGCGGCGGTAGTGGGGGATGCTATCACTGTGGCGATCTCGGTCACATCGCCAGGGATTGCACCCGGAGCAACAATTCAGGCGGTGTTGGCGGCGCCGGATGCTATCACTGTGGCGATCTTGGTCACATCGCTAGGGATTGCAACATGAGCAATAATTCCGGCGGCGGCGGAAGCGGCGGCCCATGTTTCAGTTGCGGTGGATTTGGCCACCTCGCGAGGGATTGCGTGCGAGGAGGCGGTGGCGGTAATGTTGCCATTAGCATCGGTGGTGTCTCTTGCTTTAGGTGCGGCGGTATCGGCCACATGGCAAGGGACTGCGCCACCGCGAAGGGAAGTATCGGCGGCGGTATTGGTGGCGGTGGTGGTGGTTGTTATAGGTGCGGTGAGGTTGGTCACTTGGCTAGGGATTGCATCAATGTCGGTGGTGGTGGTGGCAGCGGTGGCGGTGGTAATGGTGGTGGGAGAAACACATGCTTCAATTGTGGGAAACCTGGGCATTTTGCGAGAGAATGCGTTGAAACCTCTGGTTAG 834 0.5779 MAEERFTGVVQWFNNTKGFGFIKPDDGGEDLFVHQSSIRSDGYRSLYDGDRVQFSIADGDNHKTKAVDVTAPDGNPLQSRKENFSVGRGGGAGFGGGWRRNGGGSGGCYHCGDLGHIARDCTRSNNSGGVGGAGCYHCGDLGHIARDCNMSNNSGGGGSGGPCFSCGGFGHLARDCVRGGGGGNVAISIGGVSCFRCGGIGHMARDCATAKGSIGGGIGGGGGGCYRCGEVGHLARDCINVGGGGGSGGGGNGGGRNTCFNCGKPGHFARECVETSG* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0191 277 SUPERFAMILY Retrovirus zinc finger-like domains 243 273 IPR036875 GO:0003676|GO:0008270
Aev01g0191 277 Pfam Zinc knuckle 107 122 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Pfam Zinc knuckle 257 272 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Pfam Zinc knuckle 193 208 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Pfam Zinc knuckle 134 149 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Pfam Zinc knuckle 224 238 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Pfam Zinc knuckle 162 176 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Aev01g0191 277 PANTHER COLD SHOCK DOMAIN PROTEIN 2 152 276 - -
Aev01g0191 277 PANTHER COLD SHOCK DOMAIN PROTEIN 2 101 176 - -
Aev01g0191 277 ProSiteProfiles Zinc finger CCHC-type profile. 225 238 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 ProSiteProfiles Zinc finger CCHC-type profile. 259 272 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 PANTHER COLD SHOCK PROTEIN 2 1 99 - -
Aev01g0191 277 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Aev01g0191 277 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Aev01g0191 277 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Aev01g0191 277 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Aev01g0191 277 ProSiteProfiles Zinc finger CCHC-type profile. 135 148 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Gene3D - 1 83 IPR012340 -
Aev01g0191 277 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Aev01g0191 277 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 99 - -
Aev01g0191 277 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Aev01g0191 277 SUPERFAMILY Retrovirus zinc finger-like domains 188 240 IPR036875 GO:0003676|GO:0008270
Aev01g0191 277 PANTHER COLD SHOCK PROTEIN 2 101 176 - -
Aev01g0191 277 SMART csp_8 7 72 IPR011129 GO:0003676
Aev01g0191 277 ProSiteProfiles Zinc finger CCHC-type profile. 108 123 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 SMART c2hcfinal6 258 274 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 SMART c2hcfinal6 224 240 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 SMART c2hcfinal6 193 209 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 SUPERFAMILY Retrovirus zinc finger-like domains 100 151 IPR036875 GO:0003676|GO:0008270
Aev01g0191 277 Gene3D - 221 246 - -
Aev01g0191 277 Gene3D - 251 277 - -
Aev01g0191 277 SUPERFAMILY Retrovirus zinc finger-like domains 153 208 IPR036875 GO:0003676|GO:0008270
Aev01g0191 277 ProSiteProfiles Zinc finger CCHC-type profile. 194 207 IPR001878 GO:0003676|GO:0008270
Aev01g0191 277 Gene3D - 160 216 - -
Aev01g0191 277 Gene3D - 102 159 - -
Aev01g0191 277 PANTHER COLD SHOCK PROTEIN 2 152 276 - -
Aev01g0191 277 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0191 Aev-Chr1 1495907 1496740 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aev01g0191 CSD 5.1e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0191 K09250 - gmx:100806783 304.293