Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0114 ATGCCGAAAGCCAAAGCTGATGCTCAAGTCGCCGATAACCGGTTGAAGCGCAAGGGTGCTGGAACCGGGAGGAAGCAGGCGAAGAAAGCTAAGGATCCTAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCTGACTTCAGAGAAACATACAAGAAGGAGCATCCAAACAACAAATCCGTTGCTGTTGTTGGAAAAGCTGGTGGTGACAAATGGAAAAAGATGTCTGATGCTGAAAAGGCTCCTTTCATTGCTAAGGCAGAGAAGAAGAAAGAGGACTATGAGAAGACCATGCAAGCCTACAATAGGAAGCTGGAGGGTAAGAATTCTGAGGAAGATGAATCTGACAAGTCAAAATCTGAAGTGAATGATGAGGATGATGAGGAGGATGAAGATGATGATGAGTGA 417 0.4532 MPKAKADAQVADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSDFRETYKKEHPNNKSVAVVGKAGGDKWKKMSDAEKAPFIAKAEKKKEDYEKTMQAYNRKLEGKNSEEDESDKSKSEVNDEDDEEDEDDDE* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0114 138 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Aev01g0114 138 CDD HMGB-UBF_HMG-box 36 102 - -
Aev01g0114 138 MobiDBLite consensus disorder prediction 1 42 - -
Aev01g0114 138 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 137 - -
Aev01g0114 138 MobiDBLite consensus disorder prediction 69 138 - -
Aev01g0114 138 MobiDBLite consensus disorder prediction 121 138 - -
Aev01g0114 138 MobiDBLite consensus disorder prediction 73 120 - -
Aev01g0114 138 Coils Coil 87 114 - -
Aev01g0114 138 MobiDBLite consensus disorder prediction 9 36 - -
Aev01g0114 138 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 137 IPR031061 -
Aev01g0114 138 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
Aev01g0114 138 SMART hmgende2 35 106 IPR009071 -
Aev01g0114 138 SUPERFAMILY HMG-box 22 106 IPR036910 -
Aev01g0114 138 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Aev01g0114 138 PRINTS High mobility group (HMG1/HMG2) protein signature 89 109 - -
Aev01g0114 138 PRINTS High mobility group (HMG1/HMG2) protein signature 70 89 - -
Aev01g0114 138 Gene3D High mobility group box domain 21 123 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0114 Aev-Chr1 933816 934986 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aev01g0114 HMG_box 4.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0114 K25507 K22507 ahf:112797235 194.897