Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0107 ATGACTCGAACTCCGAGAATCCTTCAGTCTGCTTCTACTGACGTTGTGCCGTCAGTAGAAGCAACCTCTGTGGAATCTCACTTTGTTGTCATCCTGGCAGCTCTCCATTGTGCTCTCATCTGCGTTGTTGGCCTCATCGTCGTCGCCCGCTGTGCCTGGCTCCGTTGTGGCCACGTCGTTGGCGGAGCCTCGCCGCGGCGGCAGGCACTCGCCAATCGCGGCCTCAAGAAGAAGGTCCTCAATTCTCTCTCGAAGTTCACCTACGGCGGTGGCAAAGATAGCTCCAACTATGGTGACAAGAGCAAGTGGGTGGCGTCGTCGGAATGCACGATCTGCCTAGCGGAGTTTACCGCCGGCGAAGAGATCCGAGTGCTGCCGCAGTGCAGCCATGGATTCCATGTGACGTGCATTGACACGTGGCTTGGATCGCACTCTTCCTGCCCTTCCTGTCGCACTCTCCTCGTCGTCGCCGTCACAAGGTGCCAAAAGTGCGGCCAGTTCCCGGCGGTTGCAGGCGGAACAGAGTCGAAGACTATTGATGGTGGTGGCAATGTCGGTGCTGCTGTTAATTGTAGTAATAGCAACAATGTTAACAATGATTTCTTTCCTTGA 612 0.5572 MTRTPRILQSASTDVVPSVEATSVESHFVVILAALHCALICVVGLIVVARCAWLRCGHVVGGASPRRQALANRGLKKKVLNSLSKFTYGGGKDSSNYGDKSKWVASSECTICLAEFTAGEEIRVLPQCSHGFHVTCIDTWLGSHSSCPSCRTLLVVAVTRCQKCGQFPAVAGGTESKTIDGGGNVGAAVNCSNSNNVNNDFFP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0107 203 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Aev01g0107 203 CDD RING-H2_PA-TM-RING 108 151 - -
Aev01g0107 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 155 IPR013083 -
Aev01g0107 203 SMART ring_2 109 150 IPR001841 -
Aev01g0107 203 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 196 - -
Aev01g0107 203 Pfam Ring finger domain 108 151 IPR001841 -
Aev01g0107 203 SUPERFAMILY RING/U-box 108 157 - -
Aev01g0107 203 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0107 Aev-Chr1 890508 891119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0107 6 164 C3H Transcription Factor Family AT1G76410 54.938 2.35e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev01g0107 - - adu:107487390 218.779