Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2193 ATGAAGAGGGCAAGGGATGATATGTATCCTGCCTCTCAATTCAAACGCCCCTTTGCTTCATCACGTGCTGATTCCTACGGACAAAACCAAGTCCCTGGAAGTGGAGGTGGAGGCGGCGGAGGGGGAGGTGGCAATGGAGTTGGTGTTGGCGGGGCAGCAACTACGTCCCAGAAGCTGACTACCAATGATGCTTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTCCTTGAAGTTATGAAAGATTTCAAGGCCCAACGGACGGATACTGCTGGCGTCATAAAAAGGGTGAAGGAGTTATTCAAAGGCCACAACAATTTGATTTTTGGATTTAATACTTTCCTGCCAAGGGGTTATGAGATAACGCTCGACGAGGATGAGGCACCTCCAAAGAAGACGGTTGAATTTGAAGAAGCAATCAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGGGATTTGCTCGATGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATATTCGAAATTCATTGCAGCGCTTTAATGAGCGGAATTCTATGGCCCCTATGATGCGCCAAATGCCAGCAGACAAGGCACAACGTTATCGACGAGACAGGCTTCCTTCTCATGATCGTGATCGTGATATGAGTGCAGAACGCCCTGAGCTGGATGATGACAAGACAATGATGAACATACACAAGGAGCAGAGGAAGCGTGAAAGTAGGGATAGGAGAATGCGTGATCAAGATGAGAGAGAACATGATATTGATAACAACAGGGATTTGAACTTGCAACGCTTTCCTGAAAAAAAGAAATCTGTCAAGAAGGCTGAAGGCATGTATAGTCAAGCATTCAGCTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTGTCTACTGATGCTCATTTATCAAGATCATCAAAGTTGGAGGACAAGGACAAAGAGCACAAGCGTGATATGGATGGAGCTAAAGAGAAGGAACGATACAGGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTGCCTGCGGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTCTTGAATGACCATTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCGGCTGCTAAAAAAGCAGAGGAATTGTATAATAACATCACTGAAAATAAAATTGGTGTGGAGACTCTGAACCGTATTGAAGATCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTTTATATGGTGATCATGGTCTGGACGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAAGTGTCGTTCAGATTTCAATAAAGTATGGGCCGAAATTTATGCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTACTTCAAACAGCAAGATTCAAAGAACTTGAGTACAAAATCTTTGGTTACTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGATGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGTTGGAATTCATGAAGTTGGGATTCATGAGGACCTGTATAAACTTGTTCATTATTCATGTGAGGAGTTATTCTCCAGTAAAGAGTTGTTAAATAAAATTATGAGGCTTTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAGTCTCATGGGACAGAAAGGGCCGAGGACAGAAAAACTGGTCATAATGTTCGCAATTTTGGTGCACCAAACATAGGGTGTAATGGAAGTCCCCATGGAGAGTCTCTTTCAATAAATTCAAGGGTACCAAAATCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACCGGACTACTGTGGCATCCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACTTGTTGGTAGAGATGATCCATTAATGGATAAGGGACAGAAAAATGTAGAATGCAATGATAAAGCCTCCGGATTTGGCAAACAACTTACCACTGATGAACAAGGAGCTAAAAACAATGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACTAACTTAGATGTGTCTCCAGGCCGTGCCCTTACTCCATCGCGACCTACTGATGTTGATGACTCTGTATCCAAGTCTCAGGGTGTTCATGTACCTTCAGTGGAGGGATGCGACATTGCAACTCCAGTACCAGTGGCCAATGGTGTTCCAAGTGAGAGCAGTAAAGTTAAAACTCACGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAATGGTGACTCTGAGGAGGATAACTTTGTTGCTTATGGAGATTCAAATGTGCAGTCAATGGCTAAGTCAAAGCACAATGTTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATCTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGCGAAGATCATGAAGAGGAGGAAGATATAGAGCATGATGATGTTGATGGAAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAGGCCGGAGGAGATGGCACATCTTTGCCATTGACAGATAGGTTCCTTTTATCTGTGAAACCTCTCACTAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTTTATGGAAATGATGACTTCTATGTGCTTTTTAGGCTTCATCAAGCTCTTTATGAGAGGATCTTATCGGCAAAAACACATTCAATGAGTGCAGAAATGAAATGGAAAGCAAAAGATGCTAGTTCACCAGATCCTTATTTAAGATTTATGAATGCATTGTACAACTTGCTTGATGGGTCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCGTATGTGTTATTCACATTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTTGCAACTGATGAGATAGACAATAAGCTTCTCCAATTATATGAATATGAAAAGTCTCGGAAGCCTGGGAAGCTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGAGAATATATATCGTTTACAATGTTCCTCTAACCCCTCACGACTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCCGAGTTGTTTGCCGTTTCTATTGATCCAAATTTCTCTTTTTATCTGCACAATGATTTCCTGTCTGTTTTTCCCAACAAAAAGGAGCCCCATGGAATCATACTGCATAGAAACAAAAGCAAATATGGAAACTTAGATGAGCTTTCTGCAATAAGCTCTGCCATGGAAGGCGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATTTCTTATGTACTTGACACACAAGATTTCTTCTTCCGCCCAAGAAAGAAAAGACGAACGTCATCAGGGACCACAACCTCCTCCCAGTTTCGCAGCGACAGAGAGGAAAGATTCCGCAAATTGCTGGCATGCTCGTCACAATTTGTATCTTCATGA 4164 0.4114 MKRARDDMYPASQFKRPFASSRADSYGQNQVPGSGGGGGGGGGGNGVGVGGAATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIKRVKELFKGHNNLIFGFNTFLPRGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLDEFTRFLPDTSAAPSTQHAPYIRNSLQRFNERNSMAPMMRQMPADKAQRYRRDRLPSHDRDRDMSAERPELDDDKTMMNIHKEQRKRESRDRRMRDQDEREHDIDNNRDLNLQRFPEKKKSVKKAEGMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEDKDKEHKRDMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELYNNITENKIGVETLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDVGIHEVGIHEDLYKLVHYSCEELFSSKELLNKIMRLWSTFLEPMLGVPSQSHGTERAEDRKTGHNVRNFGAPNIGCNGSPHGESLSINSRVPKSDKNEADGRVTEVKNVHRTTVASNDKENGSVGGELVGRDDPLMDKGQKNVECNDKASGFGKQLTTDEQGAKNNVSIAIRGENSLNRTNLDVSPGRALTPSRPTDVDDSVSKSQGVHVPSVEGCDIATPVPVANGVPSESSKVKTHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNVQSMAKSKHNVERRKYQSRNGEDESCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQAGGDGTSLPLTDRFLLSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQALYERILSAKTHSMSAEMKWKAKDASSPDPYLRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEIDNKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEENIYRLQCSSNPSRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPNKKEPHGIILHRNKSKYGNLDELSAISSAMEGVKVINGLECKIACSSSKISYVLDTQDFFFRPRKKRRTSSGTTTSSQFRSDREERFRKLLACSSQFVSS 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2193 1387 MobiDBLite consensus disorder prediction 246 317 - -
Aed9g2193 1387 Coils Coil 532 552 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 992 1012 - -
Aed9g2193 1387 ProSiteProfiles PAH domain profile. 57 127 IPR003822 GO:0006355
Aed9g2193 1387 Gene3D Paired amphipathic helix 63 125 IPR036600 GO:0006355
Aed9g2193 1387 MobiDBLite consensus disorder prediction 416 439 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 871 1052 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 972 991 - -
Aed9g2193 1387 Pfam C-terminal domain of Sin3a protein 1100 1347 IPR031693 -
Aed9g2193 1387 ProSiteProfiles PAH domain profile. 141 211 IPR003822 GO:0006355
Aed9g2193 1387 Coils Coil 420 440 - -
Aed9g2193 1387 SUPERFAMILY PAH2 domain 330 395 IPR036600 GO:0006355
Aed9g2193 1387 MobiDBLite consensus disorder prediction 18 32 - -
Aed9g2193 1387 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1371 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 418 439 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 741 775 - -
Aed9g2193 1387 Gene3D Paired amphipathic helix 140 212 IPR036600 GO:0006355
Aed9g2193 1387 Gene3D Paired amphipathic helix 325 397 IPR036600 GO:0006355
Aed9g2193 1387 ProSiteProfiles PAH domain profile. 319 395 IPR003822 GO:0006355
Aed9g2193 1387 PANTHER SIN3B-RELATED 1 1371 IPR039774 GO:0003714
Aed9g2193 1387 MobiDBLite consensus disorder prediction 926 947 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 1028 1043 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 242 317 - -
Aed9g2193 1387 MobiDBLite consensus disorder prediction 809 829 - -
Aed9g2193 1387 SMART hdac_interact2seq4b 459 560 IPR013194 -
Aed9g2193 1387 Pfam Sin3 family co-repressor 461 552 IPR013194 -
Aed9g2193 1387 Pfam Paired amphipathic helix repeat 80 124 IPR003822 GO:0006355
Aed9g2193 1387 Pfam Paired amphipathic helix repeat 348 392 IPR003822 GO:0006355
Aed9g2193 1387 Pfam Paired amphipathic helix repeat 164 208 IPR003822 GO:0006355
Aed9g2193 1387 SUPERFAMILY PAH2 domain 138 210 IPR036600 GO:0006355
Aed9g2193 1387 SUPERFAMILY PAH2 domain 55 126 IPR036600 GO:0006355
Aed9g2193 1387 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2193 Aed-Chr9 25215704 25225850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2193 42 160 WRKY Transcription Factor Family AT4G12020 48.333 9.22e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed9g2193 Sin3a_C 2.1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2193 K11644 - gmx:100812405 2513.41