Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2192 ATGAAATTGATGAACTGGCAAGCCAACCTGCACCGCTGTAGCCAAAACCAAGCCCCTGGAAGTGGAAGTGGAAGTGGTGGGGGAGTAACTACTCCCCAGGAACCGACCAAAGTTGATCCATGGTCCTTTTTGAAGAAAATCAGACTCACGTTTCACAACCAAAGAGAAAAATATGACATGATTGATGCTGTGGGTGTCATAGCAAGGGTGAAGGTGTTATTCAAAGGGCACGACAGTTTGATTCTTGAATTTAACAATTTCCTGCCAGAGGGTTATAAGATAACCAGCCTTGACGAAGAGAAGGCTCCTCCAGAGAAAACAGAGGAATTTGAAAAAGCAACCTCTTTTATGAAAAAGATAAAGGAACGATTCAAAAGTGATGAGCATGTTTGCCAATCATTTTTGAATATTTTAAACATGCACTGGAAAGAGCATAGGGACACTAGTAAGCTTTATAGTGAGGTTGCTATCCTTTTTAAGGAGCATCAAGATTTGCTGAAGGAGTTCAATGAATTCTCAACTGATGCTGCTGATGTTGATTTGAGCAAGGGTCCAGTTGATAAAGGCCCAAGCACTTCAGGTGCTTCTGCTGGCACAAGGCCCAAACGCGGCATCATATACAGACCTAATGCTCAAGGGTCAAGTGCTGTCAAAAAGATTGTAAACAAAAGACAAACTGAAGAAAACTAA 690 0.4188 MKLMNWQANLHRCSQNQAPGSGSGSGGGVTTPQEPTKVDPWSFLKKIRLTFHNQREKYDMIDAVGVIARVKVLFKGHDSLILEFNNFLPEGYKITSLDEEKAPPEKTEEFEKATSFMKKIKERFKSDEHVCQSFLNILNMHWKEHRDTSKLYSEVAILFKEHQDLLKEFNEFSTDAADVDLSKGPVDKGPSTSGASAGTRPKRGIIYRPNAQGSSAVKKIVNKRQTEEN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2192 229 ProSiteProfiles PAH domain profile. 34 91 IPR003822 GO:0006355
Aed9g2192 229 SUPERFAMILY PAH2 domain 103 172 IPR036600 GO:0006355
Aed9g2192 229 MobiDBLite consensus disorder prediction 180 229 - -
Aed9g2192 229 PANTHER SIN3B-RELATED 15 208 IPR039774 GO:0003714
Aed9g2192 229 MobiDBLite consensus disorder prediction 13 37 - -
Aed9g2192 229 Pfam Paired amphipathic helix repeat 132 172 IPR003822 GO:0006355
Aed9g2192 229 Pfam Paired amphipathic helix repeat 57 88 IPR003822 GO:0006355
Aed9g2192 229 SUPERFAMILY PAH2 domain 32 90 IPR036600 GO:0006355
Aed9g2192 229 Gene3D Paired amphipathic helix 105 177 IPR036600 GO:0006355
Aed9g2192 229 Gene3D Paired amphipathic helix 39 89 IPR036600 GO:0006355
Aed9g2192 229 ProSiteProfiles PAH domain profile. 106 176 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2192 Aed-Chr9 25207714 25210265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2192 22 111 WRKY Transcription Factor Family AT4G12020 39.216 5.05e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed9g2192 PAH 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2192 K11644 - gmx:100807181 176.792