Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2190 ATGAGTGGTGATCATAACAGTACTTCTGCAGTTTCAACCATGGTTGGGAAGAAGAAAAAGAATGGCTCTTTGAGGTCCATTTTCATGCATGCTGATGGCTTAGACTGGTTCCTCATGATTTTTGGTCTCTTTGGGGCCATTGGTGATGGCATAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATTATGAACAATATTGGTGATGTTACTCGCAGCATAGACAGCAATTTCATCCACAGCATCAATGAGAATGCTGTGATTTTGATATACCTGGCTGGTGGGTCTTTTGTTGCTTGTTTCCTTGAGGGTTATTGTTGGACAAGAACAGGAGAAAGACAAGCTGCAAGAATGAGAGTTAGGTACCTAAAGGCAGTTCTCAGGCAAGAAGTAGCATACTTTGATTTGCATGTCACAAGCACATCTGAGGTCATCACCAGTGTCTCCAATGATAGCCTCGTAATTCAAGATGTTCTTAGTGAAAAGTTTCTTCCAAATGAAAAACTACTACAGGTTCCAAACTTTTTGATGAATGCATCAATGTTTGTTGGGAGCTACATAGTGGCATTTGCAATGTTATGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGCACTACTTGTGATCCCTGGTTTCATGTACGGAAGAACATTGATGGGATTGGCTAGCAAGATAAGAGAAGAGTATGATAAGGCTGGCACAATAGCAGAACAGGCAATATCTTCAATCAGAACCGTTTATTCTTTTGTTGGGGAAAGCAAGACCATTGATGCTTTCTCTGAGGCTCTACAAGGGTCTGTTGAGTTGGGACTGAGACAAGGCTTAGCAAAAGGGTTGGCTATTGGAAGCAATGGTGTTGTGTTTGCTATTTGGGCTTTCATTTCCTATTATGGTAGCAGATTGGTCATGTACCATGGTGCTAAAGGTGGCACCGTTTTTGCAGTTGGAGCAGCCATAGCACTTGGAGGATTGGCATTAGGTGCTGGTTTATCCAACGTGAAGTACTTCTCAGAAGCAAGCACAGCAGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCAAAGATAGATTCCGACAGCACTTCCGGGGAGATTCTGGAGAAGGTTTCAGGGGAAGTTGAGTTTCGCCACGTGGACTTCGTGTACCCGTCAAGGCCAGACAGTGTTATTCTGAGCGATTTCTGCCTGAAGATTCCAGCAGGGAAAACAGTGGCATTGGTTGGAGGGAGTGGCTCGGGAAAATCCACAGTGATTTCACTTCTACAGAGGTTTTATGACCCAACTGAGGGAGAGATATATGTTGATGGTGTGGCTATTAGTCGGTTGCAACTCAAGTGGTTGAGGTCTCAGATGGGTTTGGTTAGCCAAGAGCCTGCACTGTTTGCAACCAGCATTAGGGAGAATGTGCTCTTTGGAAGAGAGAATGCCACTCAGGAAGAGGTTGTGGAGGCTGCAAAAGCTTCAAATGCTCATAATTTCATCTCTCAGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAATTCAAATGTCAGGAGGACAAAAGCAAAGAATTGCCATAACACGAGCAATAATAAAGAAGCCGCAAATTCTTCTGTTGGATGAAGCAACAAGTGCACTAGATTCTGAATCCGAACGTGTTGTGCAAGAAGCATTGGACAAAGCAGCAGTAGGGCGCACCACAATCATCATTGCACATCGGTTATCCACCATAAGAAACGCAGATGTGATTGCTGTGGTGCAAAGTGGGAAGATCATGGAGATGGGGTCACACCATGAACTTATCCAAAACGACAATGGCCTTTACACCTCACTAGTTCGTCTCCAACAAGCCAAAAATGAAAAAGAAGACACTAATACCCTTTTTCACCCTCCTCCTCTTCCTCCATCTTCCATATCAAACAAAGACAACAACAACATTAATCACAACTCAAGCAGTCGTAGACTGTCCCTTGAGATGAGTCGCTCTAGCTCCGCCAACTCAATACCTCGAGTTGGTGGTGACTACGATGGTGATAGTGATGACAACAATGTTGTTGTTGAAGAGGTTGTGGTGGAAGAAGATAACAAGCTACCAGTTCCCTCGTTTCGAAGGTTGCTAGCACTCAACCTTCCTGAGTGGAAGCAAGCATGTTTAGGGTGTTTGAATGCAGTGTTGTTTGGTGCAATTCAGCCTGTGTATGCATTTGCAATGGGATCGGTGATATCTGTTTACTTTCTCCAAGACCATGATGAGATAAAGAGGAAAACCAGGATCTACTCACTTTCTTTCCTAGGGTTGGCTGTGTTCTCCTTGGTGGTTAATATCTTTCAGCATTACAATTTTGCTTACATGGGAGAGTACTTGACTAAGAGGGTCAGAGAACGAATGCTTTCCAAGATTCTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACTGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGACAGAATGGCTCTAGTGGTGCAAACTATTTCTGCGGTGGTAATAGCATTCACAATGGGCCTAATCATTGCATGGAGATTAGCCATTGTAATGATAGCAGTTCAACCCATAATCATAGCCTGTTTCTACACAAGACGTGTCCTTCTCAAGAACATGTCAAGCAAGGCCATAAAGGCCCAAGATGAGAGCAGCAAGATAGCTGCTGAAGCAGTTTCCAACCTCAGAACAATCACAGCATTTTCCTCCCAAGACAGAATCCTTAAAATGCTTGAAAAAGCCCAAGAAGGCCCTAGCCATGAAAGCATAAGACAATCATGGTTTGCTGGTGTTGGCCTTGCATGTTCCCAAAGCCTCACATTTTGCACTTGGGCTTTGGACTTTTGGTATGGTGGCAAGCTTGTGTTTCATGGCTTCATAAATGCAAAGGCATTGTTTGAGACCTTCATGATATTGGTGAGCACAGGTAGGGTCATTGCTGATGCTGGTAGCATGACCAATGACCTAGCTAAAGGTGCTGATGCTGTTGGCTCAGTTTTTGCAATCCTAGATAGGTACACAAAGATTGAGCCTGATGATGACATAGATGGTCACAAGCCTGAAAAACTAACAACAGGAAAAATAGAGCTTCATGATGTACATTTTGCATACCCAGCTAGGCCTAATGTGATGATCTTTCAGGGGTTCTCAATCAAAATTGATGCAGGAAAATCAACAGCATTGGTTGGAGAAAGTGGTTCTGGGAAATCAACAATAATAGGGCTAATTGAGAGATTCTATGACCCTTTGAAAGGGACAGTGACAATTGATGGTAGAGACATAAAATCATACCACCTTAGGGCACTGAGGAAGCACATTGCCCTAGTGAGCCAAGAGCCAACACTGTTTGGTGGGACCATAAGGGAAAACATTGCATATGGGGCATCAAATAGTTATAACAAAGTTGATGAGGCTGAGATAATAGAAGCAGCAAGAGCAGCAAATGCTCATGATTTCATTGCAAGCTTGAAGGATGGTTATGATACATGGTGTGGAGATAGAGGAGTGCAGCTATCAGGGGGTCAGAAGCAGAGAATTGCAATAGCTAGGGCTATATTGAAGAACCCTGAAGTGTTGCTTTTGGATGAAGCAACCAGTGCCCTAGATAGCCAATCAGAGAAGTTGGTGCAGGATGCCCTAGAGAGGGTTATGGTGGGGAGAACTAGTGTGGTGGTGGCTCATAGGTTAAGCACAATACAGAACTGCGATCTTATTGCTGTGTTGGATAAGGGGAAAGTGGTGGAGAAAGGGACACACTCGTCTTTGTTGGCATTTGGACCAAGTGGAGCTTATTACTCTTTGATGAATTTACAAAGAAGATCACCAATAAATTAA 3861 0.4377 MSGDHNSTSAVSTMVGKKKKNGSLRSIFMHADGLDWFLMIFGLFGAIGDGIGTPLVLFITSKIMNNIGDVTRSIDSNFIHSINENAVILIYLAGGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKFLPNEKLLQVPNFLMNASMFVGSYIVAFAMLWRLAIVGFPFVALLVIPGFMYGRTLMGLASKIREEYDKAGTIAEQAISSIRTVYSFVGESKTIDAFSEALQGSVELGLRQGLAKGLAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDSTSGEILEKVSGEVEFRHVDFVYPSRPDSVILSDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPTEGEIYVDGVAISRLQLKWLRSQMGLVSQEPALFATSIRENVLFGRENATQEEVVEAAKASNAHNFISQLPQGYDTQVGERGIQMSGGQKQRIAITRAIIKKPQILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKNEKEDTNTLFHPPPLPPSSISNKDNNNINHNSSSRRLSLEMSRSSSANSIPRVGGDYDGDSDDNNVVVEEVVVEEDNKLPVPSFRRLLALNLPEWKQACLGCLNAVLFGAIQPVYAFAMGSVISVYFLQDHDEIKRKTRIYSLSFLGLAVFSLVVNIFQHYNFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKNMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQDRILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFHGFINAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFAILDRYTKIEPDDDIDGHKPEKLTTGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYHLRALRKHIALVSQEPTLFGGTIRENIAYGASNSYNKVDEAEIIEAARAANAHDFIASLKDGYDTWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLAFGPSGAYYSLMNLQRRSPIN 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2190 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 719 1000 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2190 1286 ProSitePatterns ABC transporters family signature. 1180 1194 IPR017871 GO:0005524
Aed9g2190 1286 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 24 1283 - -
Aed9g2190 1286 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 346 - -
Aed9g2190 1286 CDD ABC_MTABC3_MDL1_MDL2 373 611 - -
Aed9g2190 1286 Pfam ABC transporter 392 540 IPR003439 GO:0005524
Aed9g2190 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524
Aed9g2190 1286 Gene3D ABC transporter type 1, transmembrane domain 88 1009 IPR036640 GO:0005524|GO:0016021
Aed9g2190 1286 SUPERFAMILY ABC transporter transmembrane region 29 357 IPR036640 GO:0005524|GO:0016021
Aed9g2190 1286 Gene3D - 371 641 IPR027417 -
Aed9g2190 1286 CDD ABC_6TM_Pgp_ABCB1_D2_like 702 1018 - -
Aed9g2190 1286 Gene3D - 1027 1284 IPR027417 -
Aed9g2190 1286 MobiDBLite consensus disorder prediction 616 673 - -
Aed9g2190 1286 Pfam ABC transporter 1056 1208 IPR003439 GO:0005524
Aed9g2190 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1031 1280 IPR027417 -
Aed9g2190 1286 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 24 1283 IPR039421 -
Aed9g2190 1286 Pfam ABC transporter transmembrane region 714 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2190 1286 Pfam ABC transporter transmembrane region 39 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2190 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1037 1277 IPR003439 GO:0005524
Aed9g2190 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 338 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2190 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 611 IPR027417 -
Aed9g2190 1286 SMART AAA_5 1064 1260 IPR003593 -
Aed9g2190 1286 SMART AAA_5 400 586 IPR003593 -
Aed9g2190 1286 MobiDBLite consensus disorder prediction 634 665 - -
Aed9g2190 1286 CDD ABC_MTABC3_MDL1_MDL2 1037 1280 - -
Aed9g2190 1286 SUPERFAMILY ABC transporter transmembrane region 694 1020 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2190 Aed-Chr9 25186174 25194787 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2190 1 1281 Calmodulin-binding Proteins AT2G36910 44.111 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2190 K05658 - gmx:100807709 2174.44