Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Aed9g2158
ATGGCGGATGGTCATCTCTTCAACAACATCACCCTCGGCGGCCGTGGAGGCACCAATCCAGGGCAGATAAAAATATATCCGGGAGGAATAATATGGAAGAGACAGGGTGGTGGTAAATTGATAGAAGTTGATAAATCTGACATAATGGGTGTGACATGGATGAAGGTTCCAAGGACTAACCAACTTGGTGTTCAAATCAAAGATGGCTTGTACTACAAGTTCACAGGATTTCGTGACCAGGATGTTGCAAGTTTGACCAATTTTTTCCAAAACACCTGTGGAATATCAGTAGAAGAGAAGCAGCTTTCCGTTAGTGGACGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCTTTAGCAGATGTCTCTCAAACGTCACTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCATGTTTTAATAAATTCATGCAAACTGGCAGCTTTTTGCAAGAAAATTGTTCTCATTCAAGTTTGGGCTTGTACAATATTGAAGACTCTAAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGCCCCCCTGCTCAGGTTTTCCGTGACAAAATTATGTCCATGGCTGATGTTGGCGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAGTTACACATGTCATTCTTGCGGCTTCAAGGACAAGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGGCAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGATTTGGTAATAAATGAAGATCTTTATAACATAAAGTACAAGGACAAATTGGAGCTTTCTTATAAGGGGCTTATTCATGAAGTGTTCACCACAATCTTACGTGGCTTGTCTAGTGCCAAAGTGACTAAGCCCGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAATCGACTATGTGGAATTTGAGCGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGATCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTCTGAACTTAGGAGATGCCCAAGCTACTGTTGGCATAAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATAAAAAATGAAGCTGGTGTTGATGAAAGTGATGAGGAGGATTCCGATTTTGTTGCTGAAAAGGATGATGAGGGTGATGATTCTGATGGCAGTGATAGTGGTGATGAGAGAGAGGAAAACACCTTAATGGTGACCAATTTTCAGAAGCCTGCCAAAAAGGAAGCAAAGAAGGATCTGCCTTCCAAGGCATCTACTTCTAAAAGGAAATCAAAAGATGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTAGTTTCATGTTCTATTCTAATTTGGAAAGAGAGAATCTAAGGAAAACTAATCCTGGAATTTCATTTACGGATGTGGCAAGATTACTTGGAGATAAATGGAAAAAGATGTCAGTGGAAGAGAAGGAACCCTACGAGGCAAAAGCACGTGAAGATAAAAAACGTTACAAGGTTGAGATTAGTGACTACAAGAATCCGCAACCAATGACTATTGATCCGGACAATGAATCCGACAGTGCCTAA
1863
0.3994
MADGHLFNNITLGGRGGTNPGQIKIYPGGIIWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVASLTNFFQNTCGISVEEKQLSVSGRNMLAFMVGSKQAFEVSLADVSQTSLQGKNDVILEFHVLINSCKLAAFCKKIVLIQVWACTILKTLKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSDLVINEDLYNIKYKDKLELSYKGLIHEVFTTILRGLSSAKVTKPGKFRSCQDGYAIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKILNLGDAQATVGIKKVLENDDDDAVDPHLERIKNEAGVDESDEEDSDFVAEKDDEGDDSDGSDSGDEREENTLMVTNFQKPAKKEAKKDLPSKASTSKRKSKDDEDGKKKKQKKKKDPNAPKRAMSSFMFYSNLERENLRKTNPGISFTDVARLLGDKWKKMSVEEKEPYEAKAREDKKRYKVEISDYKNPQPMTIDPDNESDSA
620
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Aed9g2158
620
Gene3D
-
1
92
IPR011993
-
Aed9g2158
620
MobiDBLite
consensus disorder prediction
454
480
-
-
Aed9g2158
620
Pfam
Structure-specific recognition protein (SSRP1)
107
185
IPR024954
-
Aed9g2158
620
ProSiteProfiles
HMG boxes A and B DNA-binding domains profile.
536
604
IPR009071
-
Aed9g2158
620
PANTHER
FACT COMPLEX SUBUNIT SSRP1-B
1
362
-
-
Aed9g2158
620
SMART
Rtt106_2
339
419
IPR013719
-
Aed9g2158
620
CDD
PH1_SSRP1-like
218
351
-
-
Aed9g2158
620
Gene3D
High mobility group box domain
519
612
IPR036910
-
Aed9g2158
620
Gene3D
-
95
190
IPR038167
-
Aed9g2158
620
Pfam
HMG (high mobility group) box
536
604
IPR009071
-
Showing 1 to 10 of 29 entries
Previous
1
2
3
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Aed9g2158
Aed-Chr9
24897999
24904111
Dispersed
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Aed9g2158
532
604
ARID Transcription Factor Family
AT1G04880
36.986
2.39e-09
58.2
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
HMG
Aed9g2158
POB3_N
2e-22
CL0266
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Aed9g2158
K09272
-
gmx:100780190
988.793
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows