Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2158 ATGGCGGATGGTCATCTCTTCAACAACATCACCCTCGGCGGCCGTGGAGGCACCAATCCAGGGCAGATAAAAATATATCCGGGAGGAATAATATGGAAGAGACAGGGTGGTGGTAAATTGATAGAAGTTGATAAATCTGACATAATGGGTGTGACATGGATGAAGGTTCCAAGGACTAACCAACTTGGTGTTCAAATCAAAGATGGCTTGTACTACAAGTTCACAGGATTTCGTGACCAGGATGTTGCAAGTTTGACCAATTTTTTCCAAAACACCTGTGGAATATCAGTAGAAGAGAAGCAGCTTTCCGTTAGTGGACGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCTTTAGCAGATGTCTCTCAAACGTCACTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCATGTTTTAATAAATTCATGCAAACTGGCAGCTTTTTGCAAGAAAATTGTTCTCATTCAAGTTTGGGCTTGTACAATATTGAAGACTCTAAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGCCCCCCTGCTCAGGTTTTCCGTGACAAAATTATGTCCATGGCTGATGTTGGCGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAGTTACACATGTCATTCTTGCGGCTTCAAGGACAAGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGGCAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGATTTGGTAATAAATGAAGATCTTTATAACATAAAGTACAAGGACAAATTGGAGCTTTCTTATAAGGGGCTTATTCATGAAGTGTTCACCACAATCTTACGTGGCTTGTCTAGTGCCAAAGTGACTAAGCCCGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAATCGACTATGTGGAATTTGAGCGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGATCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTCTGAACTTAGGAGATGCCCAAGCTACTGTTGGCATAAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATAAAAAATGAAGCTGGTGTTGATGAAAGTGATGAGGAGGATTCCGATTTTGTTGCTGAAAAGGATGATGAGGGTGATGATTCTGATGGCAGTGATAGTGGTGATGAGAGAGAGGAAAACACCTTAATGGTGACCAATTTTCAGAAGCCTGCCAAAAAGGAAGCAAAGAAGGATCTGCCTTCCAAGGCATCTACTTCTAAAAGGAAATCAAAAGATGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTAGTTTCATGTTCTATTCTAATTTGGAAAGAGAGAATCTAAGGAAAACTAATCCTGGAATTTCATTTACGGATGTGGCAAGATTACTTGGAGATAAATGGAAAAAGATGTCAGTGGAAGAGAAGGAACCCTACGAGGCAAAAGCACGTGAAGATAAAAAACGTTACAAGGTTGAGATTAGTGACTACAAGAATCCGCAACCAATGACTATTGATCCGGACAATGAATCCGACAGTGCCTAA 1863 0.3994 MADGHLFNNITLGGRGGTNPGQIKIYPGGIIWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVASLTNFFQNTCGISVEEKQLSVSGRNMLAFMVGSKQAFEVSLADVSQTSLQGKNDVILEFHVLINSCKLAAFCKKIVLIQVWACTILKTLKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSDLVINEDLYNIKYKDKLELSYKGLIHEVFTTILRGLSSAKVTKPGKFRSCQDGYAIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKILNLGDAQATVGIKKVLENDDDDAVDPHLERIKNEAGVDESDEEDSDFVAEKDDEGDDSDGSDSGDEREENTLMVTNFQKPAKKEAKKDLPSKASTSKRKSKDDEDGKKKKQKKKKDPNAPKRAMSSFMFYSNLERENLRKTNPGISFTDVARLLGDKWKKMSVEEKEPYEAKAREDKKRYKVEISDYKNPQPMTIDPDNESDSA 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2158 620 Gene3D - 1 92 IPR011993 -
Aed9g2158 620 MobiDBLite consensus disorder prediction 454 480 - -
Aed9g2158 620 Pfam Structure-specific recognition protein (SSRP1) 107 185 IPR024954 -
Aed9g2158 620 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 536 604 IPR009071 -
Aed9g2158 620 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 362 - -
Aed9g2158 620 SMART Rtt106_2 339 419 IPR013719 -
Aed9g2158 620 CDD PH1_SSRP1-like 218 351 - -
Aed9g2158 620 Gene3D High mobility group box domain 519 612 IPR036910 -
Aed9g2158 620 Gene3D - 95 190 IPR038167 -
Aed9g2158 620 Pfam HMG (high mobility group) box 536 604 IPR009071 -
Aed9g2158 620 PANTHER FACT COMPLEX SUBUNIT SSRP1 362 616 - -
Aed9g2158 620 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 362 - -
Aed9g2158 620 Gene3D - 210 349 - -
Aed9g2158 620 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Aed9g2158 620 SUPERFAMILY HMG-box 523 605 IPR036910 -
Aed9g2158 620 MobiDBLite consensus disorder prediction 446 543 - -
Aed9g2158 620 SUPERFAMILY PH domain-like 217 417 - -
Aed9g2158 620 MobiDBLite consensus disorder prediction 580 601 - -
Aed9g2158 620 CDD HMGB-UBF_HMG-box 536 601 - -
Aed9g2158 620 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 362 616 - -
Aed9g2158 620 Gene3D - 350 426 IPR011993 -
Aed9g2158 620 MobiDBLite consensus disorder prediction 580 620 - -
Aed9g2158 620 MobiDBLite consensus disorder prediction 496 527 - -
Aed9g2158 620 Pfam Histone chaperone Rttp106-like 348 416 IPR013719 -
Aed9g2158 620 SMART hmgende2 535 605 IPR009071 -
Aed9g2158 620 PRINTS Structure-specific recognition protein signature 230 246 IPR000969 GO:0003677|GO:0005634
Aed9g2158 620 PRINTS Structure-specific recognition protein signature 275 291 IPR000969 GO:0003677|GO:0005634
Aed9g2158 620 PRINTS Structure-specific recognition protein signature 340 353 IPR000969 GO:0003677|GO:0005634
Aed9g2158 620 PRINTS Structure-specific recognition protein signature 252 268 IPR000969 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2158 Aed-Chr9 24897999 24904111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2158 532 604 ARID Transcription Factor Family AT1G04880 36.986 2.39e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aed9g2158 POB3_N 2e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2158 K09272 - gmx:100780190 988.793