Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2157 ATGGTTGGTCATGCTACAAGGGTTGCTTTCACCCTCATGTTCACTGTCGCCGCTATCATTCCATGCCTTCAGGCTGGTATTGCTGAGTTTGATGATTTTCTCATTGCCCAATCTAAACAGGCCCACAAAATTGCTCTTGAATCCTATGTCCCAGAACCCGATGATGTCACCGCTGATCTCAATTTCCATGTTCATATGTCACTTGAAAACGCAACAAGGAGGGACCTAAGGGAGCAGAAAAAAGGAAGTAAGGCATGCGAGGCTTCCAACCCCATCGACACTTGCTGGAGATGCAAACAGGACTGGGCCAATGACCGTTACAAGTTAGCTAACTGTAGCAAAGGGTTCGGGAGACGCGCAGTGGGTGGTTTCGGTGGGCCCATCTATGTCGTCAATGATACCTCCGATGACGACATGGTGAACCCAAAGCCCGGGACCATCCGTCACGCCGTCACCCAACAGGGCCCATTGTGGATCATCTTCGAGCGCAGCATGGTCTTTAATTTGAAGCAGGAGCTCATGATTTCCTCCGACAAGACCATCGACGGCCGCGGCGCCAACGTCCACTTCAGGGACGGCGGTGGCCTCACCATCCAGTTCGCCAACAACGTTATCATCCACGGTATCTACATCAAGAACATCGTACCCAAGAATGGTGGCATGATTAGGGACTCCTACAACCATTATGGACTCAGGACCCAAAGCGACGGTGATGCCATCTCCATCTTCGGTTCCTCCAACGTCTGGATCGACCATGTTTCCATGTCTAACTGCGCCGATGGCCTTATCGATGTCATCCAGGGCTCCACCGCTGTCACCATCACAAATTGCCACATGACCAAACATAACGATGTGATGCTTTTTGGGGCAAGTGACCAAAACGAAGATGACAAGATCATGCAGATCACACTGGCGTTCAACCACTTCGGGCAAGGACTGATCCAGAGGATGCCACGGTGCAGGTTCGGGTTCGTGCACGTCCTGAACAACGACTACACCCACTGGATGATGTACGCCATCGGAGGAAGCTCGGGGCCAACAATTCTGAGCCAGGGAAACCGGTTCATCGCCCCGAACAACGACGCCGCAAAAATCATCACACACAGGGACTATGCATCGGAGGATGTGTGGAAGAACTGGAAGTGGCAATCGGACATGGACCTGTTCATGAACGGAGCACAGTTCATTTCCTCAGGAGGGCCCATTGAGATGACATACAAAAAGGGTCTCATCATGAAGCCAAGAGACGGAACCCACGTCAGCAGGTTGACAAGGCATGCTGGTGCCCTAAACTGCATCGTTGGCAGACCTTGCTAG 1317 0.5201 MVGHATRVAFTLMFTVAAIIPCLQAGIAEFDDFLIAQSKQAHKIALESYVPEPDDVTADLNFHVHMSLENATRRDLREQKKGSKACEASNPIDTCWRCKQDWANDRYKLANCSKGFGRRAVGGFGGPIYVVNDTSDDDMVNPKPGTIRHAVTQQGPLWIIFERSMVFNLKQELMISSDKTIDGRGANVHFRDGGGLTIQFANNVIIHGIYIKNIVPKNGGMIRDSYNHYGLRTQSDGDAISIFGSSNVWIDHVSMSNCADGLIDVIQGSTAVTITNCHMTKHNDVMLFGASDQNEDDKIMQITLAFNHFGQGLIQRMPRCRFGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDAAKIITHRDYASEDVWKNWKWQSDMDLFMNGAQFISSGGPIEMTYKKGLIMKPRDGTHVSRLTRHAGALNCIVGRPC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2157 438 SUPERFAMILY Pectin lyase-like 90 429 IPR011050 -
Aed9g2157 438 PANTHER PECTATE LYASE 18-RELATED 6 438 IPR045032 GO:0030570
Aed9g2157 438 Pfam Pectate lyase 170 355 IPR002022 -
Aed9g2157 438 Gene3D - 89 431 IPR012334 -
Aed9g2157 438 PANTHER PECTATE LYASE 6 438 - -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Aed9g2157 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Aed9g2157 438 SMART amb_all 164 361 IPR002022 -
Aed9g2157 438 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2157 Aed-Chr9 24879405 24881395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2157 16 438 Polysaccharide Lyase AT1G14420 56.818 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2157 K01728 - gmx:100785801 754.592