Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2146 ATGGCCTTCCCTCCCTCTCACACTTTCATGTTCCAAACCCATCATGAAGATGATCATCATGATCCCCATCATCACCACCAGCTCCATCTGCGTTCAACCTCAACCTCTCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGGGGTGGTGGTGGTGCAGGTGCAGGTTTTATGATGAAGCGTTCGATGTCGTTTTCCGGCATAGAGAACAACCACAACCACAACCAACACAAGTGCGATGAATTAGTGCATGGAGATGACGAGTTATCCGACGATGGATCCCTGCAGCTTGGGGAGAAGAAGAAGAGGTTGAGCTTAGAGCAAGTGAAGGCGCTCGAGAAGAGCTTCGAGCTCGGGAACAAGCTCGAGCCGGAGCGAAAAATGCAGCTAGCCAAGGCCCTGGGGCTTCAGCCGAGGCAGATCGCGATTTGGTTCCAGAACAGAAGAGCAAGGTGGAAGACCAAGCAGCTCGAGAAGGAATATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTTAAGGCTGATAATGACTCCCTCAAGTCTCAAAACCAGAAACTCCATGCAGAGAAAGAAACTGAGGGTTCTTGGAGCAATGGCAGCTGCAACAACAACAATTCAGATATCAATTTGGAACTCTCAAGAACACCACCAGTGATGAACAACAACAACAACAACAGTAGTCCTGTGTCTTCTCATCAAAATGGAAAAAGCCTTATTAAGCCAACAAGCATAACTCAACTCCTTCAATGCTCATCATCAAGACCAGATCTCCAAGATGATCAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGATCATCAGCAGCAGCAGCACCACCAGTTTCATTAA 879 0.4801 MAFPPSHTFMFQTHHEDDHHDPHHHHQLHLRSTSTSLNAFPSFPPHHFQGGGGGAGAGFMMKRSMSFSGIENNHNHNQHKCDELVHGDDELSDDGSLQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKSQNQKLHAEKETEGSWSNGSCNNNNSDINLELSRTPPVMNNNNNNSSPVSSHQNGKSLIKPTSITQLLQCSSSRPDLQDDQSFCNMFHNIDEQQNFWPWPDHQQQQHHQFH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2146 292 MobiDBLite consensus disorder prediction 12 33 - -
Aed9g2146 292 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677
Aed9g2146 292 MobiDBLite consensus disorder prediction 177 238 - -
Aed9g2146 292 Pfam Homeodomain 102 155 IPR001356 GO:0003677
Aed9g2146 292 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 190 289 - -
Aed9g2146 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 190 289 IPR045224 GO:0003700
Aed9g2146 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 193 IPR045224 GO:0003700
Aed9g2146 292 Coils Coil 149 190 - -
Aed9g2146 292 PRINTS Lambda-repressor HTH signature 128 137 IPR000047 GO:0003677
Aed9g2146 292 PRINTS Lambda-repressor HTH signature 137 153 IPR000047 GO:0003677
Aed9g2146 292 CDD homeodomain 102 158 IPR001356 GO:0003677
Aed9g2146 292 SMART HOX_1 100 161 IPR001356 GO:0003677
Aed9g2146 292 SUPERFAMILY Homeodomain-like 96 159 IPR009057 -
Aed9g2146 292 Gene3D - 96 165 - -
Aed9g2146 292 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981|GO:0006355
Aed9g2146 292 MobiDBLite consensus disorder prediction 177 193 - -
Aed9g2146 292 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 193 - -
Aed9g2146 292 Pfam Homeobox associated leucine zipper 157 190 IPR003106 GO:0006355|GO:0043565
Aed9g2146 292 MobiDBLite consensus disorder prediction 194 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2146 Aed-Chr9 24793945 24796950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2146 1 282 Homeobox Transcription Factor Family AT5G15150 50.314 2.70e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed9g2146 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2146 K09338 - gmx:100816097 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2146 9 24793945 24796950 Aed3g0402 3 2892151 2894475 PCT