Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2143 ATGGCTGAAGCTGCTGAGCCTAATAAGGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGACTTTGCCCTTTTACAAGCTCTTCTCATTTGCAGACAAGTTTGATTGGATTCTCATGATCTCAGGAAGCATAGGAGCCATTATTCATGGCTCATCCATGCCAGTTTTCTTTCTTCTCTTTGGTGAAATGGTAAATGGCTTTGGCAAAAACCAAATGAACTTGAAGCAAATGACAGAAGAAGTATCAAAGTATGCTCTCTATTTCGTGTACCTTGGCCTTGTCGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGGCAAGTGAGCACACTGAGAAAGAAGTACTTGGAGGCAGTGCTTAAACAGGACGTTGGTTTCTTTGACACTGATGCAAGAACAGGAGATATAGTTTTTAGTGTCTCCACGGATACACTACTAGTTCAAGATGCTATAAGCGAGAAGGTGGGGAACTTCATACACTATCTATCAACGTTTCTGGCGGGTCTAGTGGTTGGTTTTGTTTCAGCATGGAGGCTTGCACTTCTGAGTGTTGCTGTGATTCCTGGGATTGCTTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCAAAGAGTCGTGAATCTTATGCAAATGCTGGCATCATAGCAGAACAGGCCATTGCTCAAGTTAGAACTGTTTACTCTTATGTTGGTGAGAGCAAGGCACTGAATTCTTATTCTGATGCAATACAAAACACACTAAAGCTTGGATACAAGGCAGGAATGGCCAAAGGTTTGGGCCTAGGATGCACATATGGAATAGCATGCATGTCTTGGGCACTAGTTTTCTGGTATGCTGGAGTTTTCATCAGGAATGGACAAACCGACGGAGGCAAGGCATTCACGGCAATTTTCTCGGCCATTGTTGGTGGCATGAGTTTGGGACAGTCGTTTTCGAACTTAGGCGCTTTTAGCAAAGGCAAAGCAGCTGGATACAAGTTGATGGAAATCATCAAACAGAAACCCACCATAGTGGAGGATCCATCAGAAGGAAAGTGCTTGGCTGAGGTTAATGGCAACATTGAGTTTAAGGATGTTACTTTCAGCTACCCTTCGAGGCCGGACGTGTTTATCTTTCGCAGTTTCTCAATCTTTTTCCCTGCTGGAAAAACTGTTGCGGTTGTTGGTGGTAGTGGCTCTGGAAAGAGCACAGTTGTTTCCTTGATAGAAAGATTCTATGATCCAAATGAAGGTCAGGTTATGCTGGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGTGATCAAATTGGATTGGTGAATCAAGAACCTGCACTCTTTGCAACTACCATTCTTGAGAATATACTCTACGGAAAACCTGATGCAACAATGGCTGAAGTGGAAGCTGCTACTTCTGCTGCAAATGCTCATAGTTTTATCACCTTGCTTCCTAATGGCTATAACACTCAGGTTGGAGAGCGAGGAGTTCAATTATCCGGGGGCCAAAAGCAGAGAATTGCAATTGCCAGAGCTATGTTGAAGAATCCAAAGATCCTTCTACTAGATGAAGCAACTAGTGCTCTTGATGCAGGGTCTGAAAGCATTGTTCAAGAGGCACTGGACAGGCTCATGGTTGGAAGAACAACCGTGGTTGTTGCGCACCGTCTATCAACCATAAGAAATGTTGATACCATTGCAGTTATACAACTAGGCCAGGTTGTTGAGACAGGCACACATGAAGAGCTCATTGCCAAGGCTGGCACCTATGCCTCGCTCATTCGGTTCCAAGAAATGGTTGGAAATAGGGACTTCTCCAACCCGTCAACTCGTCGGACACGGTCATCACGCTTGAGCCATTCGTTGTCAACAAAGTCCTTGAGCCTCCGGTCTGGAAGCCTGAGGAACTTGAGCTACCAGTACAGCACCGGTGCTGACGGCCGCATTGAGATGATATCGAATGCTGAGACCGACAGGAAGAATCCTGCCCCAGATGGCTATTTCTGCCGGTTGCTCAAGATGAATGCTCCCGAATGGCCTTACTCGATCATGGGAGCTGTTGGTTCTGTCCTCTCCGGATTCATTGGCCCCACTTTTGCCATTGTTATGAGCAACATGATTGAGGTCTTTTACTTCAGTAATTATGCATCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATCTACATTGGTGCTGGTCTCTATGCAGTTGGTGCATACTTGATACAACATTACTTTTTCAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTCGCCTAGCCACAGATGCAGCTGATGTAAAGTCTGCCATTGCTGAGAGGATATCAGTGATTCTTCAGAACATGACATCTCTCCTTACTTCTTTCATAGTTGCTTTCATTGTGGAATGGAGGGTTTCCCTGCTCATCTTGGCAACTTTCCCTCTCCTTGTTCTAGCCAATTTTGCTCAGCAACTATCACTAAAAGGGTTTGCCGGAGACACAGCGAAGGCTCATGCAAAGACAAGCATGATAGCAGGAGAGGGAGTGAGCAACATCAGAACAGTCGCAGCATTCAATGCTCAGAACAAGATGTTATCAGTGTTCTGCCACGAGCTCCGCGTGCCTCAGCGCCAGAGCCTGCGTCGGAGCCAAACCTCTGGCTTCTTGTTCGGCCTCTCTCAGCTCGCCCTCTACGCCTCTGAGGCTCTCATTCTATGGTATGGTGCACATTTGGTCAGCAAAGGTGCCTCAACTTTCTCGAAGGTCATCAAGGTGTTTGTTGTCCTCGTGATCACTGCAAATTCAGTGGCGGAAACCGTGAGCCTTGCACCGGAGATTATTCGTGGTGGTGAGGCCGTTGGCTCGGTGTTCTCGATCCTTGATCGTTCAACGAGAATTGACCCTGATGATCCCGATGCTGAGCCGGTTGAATCACTTCGCGGGGAGATTGAGCTGAGACATGTTGACTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATTTGAGCCTTAGGATCCGTGCGGGACAGAGTCAGGCTCTTGTTGGGGCAAGTGGGTCGGGGAAGAGTTCTGTTATTGCATTGATTGAGAGATTCTATGACCCTATTGCTGGAAAAGTGATGGTGGATGGAAAGGACATTAGGAAGTTGAACTTGAAGTCTTTGAGGCTCAAGATAGGGTTGGTTCAGCAAGAGCCGGCACTTTTCGCAGCAAGCATTCTCGAGAACATTGCATATGGCAAAGAGGGTGCAACCGAGGCCGAGGTGATCGAGGCTGCGCGGGCCGCCAACGTGCATGGATTTGTGAGTGGTTTGCCGGAGGGTTACAAGACACCGGTTGGTGAGAGAGGTGTGCAGCTCTCCGGAGGGCAAAAGCAGAGGATTGCCATAGCAAGAGCTGTGCTGAAGGACCCTACAATTCTTCTGCTAGATGAGGCCACAAGTGCACTTGATGCTGAGTCTGAGTGTGTGCTACAAGAGGCCTTGGAGAGGCTAATGAGGGGTCGCACCACGGTGCTCGTGGCTCATCGTCTTTCGACCATAAGAGGGGTTGATTGCATTGGTGTGGTTCAAGATGGTCGCATTGTGGAACAAGGTAGCCATTCTGAGCTTGTCAGCAGGCACGAGGGTGCATATTCTAGACTCTTGCAGCTACAACTTCATCACATATGA 3690 0.4734 MAEAAEPNKALPEAEKKKEQTLPFYKLFSFADKFDWILMISGSIGAIIHGSSMPVFFLLFGEMVNGFGKNQMNLKQMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDVFIFRSFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVMLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQLGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDRKNPAPDGYFCRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFSNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQRQSLRRSQTSGFLFGLSQLALYASEALILWYGAHLVSKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAEPVESLRGEIELRHVDFAYPSRPDVMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASILENIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRHEGAYSRLLQLQLHHI 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2143 1229 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Aed9g2143 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Aed9g2143 1229 SMART AAA_5 390 681 IPR003593 -
Aed9g2143 1229 SMART AAA_5 1014 1200 IPR003593 -
Aed9g2143 1229 Pfam ABC transporter 1006 1154 IPR003439 GO:0005524
Aed9g2143 1229 Pfam ABC transporter 385 530 IPR003439 GO:0005524
Aed9g2143 1229 CDD ABC_MTABC3_MDL1_MDL2 987 1225 - -
Aed9g2143 1229 Gene3D - 977 1225 IPR027417 -
Aed9g2143 1229 Gene3D - 353 601 IPR027417 -
Aed9g2143 1229 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1227 IPR039421 -
Aed9g2143 1229 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Aed9g2143 1229 Pfam ABC transporter transmembrane region 766 936 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2143 1229 Pfam ABC transporter transmembrane region 44 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2143 1229 Gene3D ABC transporter type 1, transmembrane domain 766 976 IPR036640 GO:0005524|GO:0016021
Aed9g2143 1229 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1227 - -
Aed9g2143 1229 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Aed9g2143 1229 SUPERFAMILY ABC transporter transmembrane region 26 348 IPR036640 GO:0005524|GO:0016021
Aed9g2143 1229 SUPERFAMILY ABC transporter transmembrane region 673 966 IPR036640 GO:0005524|GO:0016021
Aed9g2143 1229 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2143 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1225 IPR027417 -
Aed9g2143 1229 Gene3D ABC transporter type 1, transmembrane domain 26 614 IPR036640 GO:0005524|GO:0016021
Aed9g2143 1229 ProSitePatterns ABC transporters family signature. 1126 1140 IPR017871 GO:0005524
Aed9g2143 1229 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g2143 1229 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 970 - -
Aed9g2143 1229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Aed9g2143 1229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 989 1223 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2143 Aed-Chr9 24691587 24701095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2143 2 1225 Calmodulin-binding Proteins AT2G36910 52.848 0.0 1317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2143 K05658 - gmx:100780618 2225.67