Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2138 ATGGGAAGGCCACCATGTTGTGATAAAGAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAACATGGTCCTGGCAATTGGAAGGCTGTTCCTGCCAATACTGGGTTGGCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCTGCATACCTACCACAAAGAACAGATAATGACATAAAGAACTATTGGAATACCTATTTGAAAAAGAAGCTGAACAACAAATTGGAATTAGCAGCAGGTTCTGATGAAGGAGGAAGCAACTTAGGGGTTTCATCAGTTTCTAATCAACCAATGTCTAGAGGCCAATGGGAAAGAAGGCTTCAAACAGATATCCACATGGCCAAAAAAGCTCTCAGTGAAGCACTCTCACCAAACAAGGCCTTAATGTTAGCTGAGTCGAACATAAACCTCTCCAATGTAAAAAACACTACTAAACCAACAACAACACAATCTATGTGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGGTGGATGAAAAACACACCAAAAGCCTCTAAGAATGCATTCAATGACAGTACTACTACTACTACTGCTTCTGCTTCTGCTTCTAGTGAAGGAACAACAACAACGACAACTTTTGAGTCCTTGTTTGGTTATACTAATAATGAGTCTTTGGATTACTCTTCAACCAATTCTGATCAGTTCTCACAATCTCTTTCTCCAGATGAGGCTAATGCTCTTTTCCAAGATGAGAGCAAGCCTGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTGGTCAAGAGAAACTTGGCTTCTAG 942 0.413 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPANTGLARCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNNKLELAAGSDEGGSNLGVSSVSNQPMSRGQWERRLQTDIHMAKKALSEALSPNKALMLAESNINLSNVKNTTKPTTTQSMCYASSADNIARLLKGWMKNTPKASKNAFNDSTTTTTASASASSEGTTTTTTFESLFGYTNNESLDYSSTNSDQFSQSLSPDEANALFQDESKPDMPFSLLEKWLLDDAAGQEKLGF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2138 313 Gene3D - 69 128 - -
Aed9g2138 313 CDD SANT 69 112 IPR001005 -
Aed9g2138 313 MobiDBLite consensus disorder prediction 264 287 - -
Aed9g2138 313 CDD SANT 16 61 IPR001005 -
Aed9g2138 313 MobiDBLite consensus disorder prediction 220 242 - -
Aed9g2138 313 MobiDBLite consensus disorder prediction 264 281 - -
Aed9g2138 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed9g2138 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed9g2138 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed9g2138 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 311 - -
Aed9g2138 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed9g2138 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed9g2138 313 SMART sant 13 63 IPR001005 -
Aed9g2138 313 SMART sant 66 114 IPR001005 -
Aed9g2138 313 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 311 - -
Aed9g2138 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed9g2138 313 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed9g2138 313 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2138 Aed-Chr9 24609648 24612798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2138 1 313 MYB Transcription Factor Family AT5G62470 49.859 7.11e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed9g2138 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2138 K09422 - gmx:778078 425.246