Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2137 ATGGAGATTATAACACCAACACTACCACCAACAGCAGCAGCAGCAACAGCAATCGTCACAAACGCAGCTGCGAAATCGCCGGAACCCGACGTAGAGACTCCGACCCGGATCCATCCATCGTTGAACCCGAATCCAAAGCCGGTGTCTTTCTCTAACGGCGTCTTGAAGCGCCACCATGCAAACCACCGCGCCGCGGTGGTGGTTTACAAGGAATGCTTGAAGAACCACGTCGCCAGCTTGGGCGGCCACGCTTTGGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCAACCCCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGTCGCGAACCGGAGGATCCACCCATTTCTCCGGCGACGCACCATGTCCTGGAATACCAGTCCCACCGCCGCCACCACCCTCCTCCGCCTGCGCAGCCGCACCGGAGCCCGAATTCCGCCTCCCCGCCGCCGATCTCCTCCTACCCCTCCGCGCCCCACATGCTCCTCGCCCTCTCCGGCGGCGGACTCTCAGTCGCACCGGAAAACACAGCCGCGCCGGCGCCGGCGCACCACTCTCGGAAGCGCTTCCGAACGAAGTTCACCCAGGAGCAGAAGGAGAAGATGCATGAGTTCGCGGACAGAGTGGGGTGGAAGATGCAGAAGCGCGACGACGAAACGGTTATGGAGTTCTGCAACGAGATTGGCGTTGACAGAGGAGTTCTCAAAGTGTGGATGCACAACAACAAGAACACTCTCGCCAGAAAAGACAACAACCTTAACGGCATCGCTGTCAGTGTCAGCGCCAACGGAATTTCTCACGTTGAGGCGGATGACAGCGCCGCCGTTAAAAACAGCGTTCATGTTCATCACGAACATGAACACGGCGGAATTAACGGCAACGTTAACGGTAACGGCGATGACAACAACCACAACATCGGTTCGCAGGATGTGAACGAGTACGAGAATGACAGTGGGACTAACGGCGGTGGTACTAATGGGTCTTCTTCTTCTTCTTGA 1029 0.5889 MEIITPTLPPTAAAATAIVTNAAAKSPEPDVETPTRIHPSLNPNPKPVSFSNGVLKRHHANHRAAVVVYKECLKNHVASLGGHALDGCGEFMPSPAATPDDPSSIKCAACGCHRNFHRREPEDPPISPATHHVLEYQSHRRHHPPPPAQPHRSPNSASPPPISSYPSAPHMLLALSGGGLSVAPENTAAPAPAHHSRKRFRTKFTQEQKEKMHEFADRVGWKMQKRDDETVMEFCNEIGVDRGVLKVWMHNNKNTLARKDNNLNGIAVSVSANGISHVEADDSAAVKNSVHVHHEHEHGGINGNVNGNGDDNNHNIGSQDVNEYENDSGTNGGGTNGSSSSS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2137 342 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 271 - -
Aed9g2137 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Aed9g2137 342 MobiDBLite consensus disorder prediction 289 342 - -
Aed9g2137 342 Gene3D - 183 258 - -
Aed9g2137 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 271 - -
Aed9g2137 342 SUPERFAMILY Homeodomain-like 187 258 IPR009057 -
Aed9g2137 342 MobiDBLite consensus disorder prediction 305 342 - -
Aed9g2137 342 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Aed9g2137 342 MobiDBLite consensus disorder prediction 137 170 - -
Aed9g2137 342 MobiDBLite consensus disorder prediction 25 46 - -
Aed9g2137 342 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 197 254 IPR006455 -
Aed9g2137 342 MobiDBLite consensus disorder prediction 148 166 - -
Aed9g2137 342 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2137 Aed-Chr9 24577871 24578899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2137 13 253 ZF-HD Transcription Factor Family AT5G15210 55.061 5.26e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aed9g2137 ZF-HD_dimer 4.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2137 - - gmx:100814730 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2137 9 24577871 24578899 Aed3g0395 3 2798664 2800948 PCT