Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2129 ATGTTCACCTTCATGAAAAATAAAATGGCTCATCTTGGCTTCTTTTTACTTCTGGGGTGTCTGTGTCTCTCCTTGATCTCTTATGCTAATGGTTATGTGAGCAGTGGTGGCTGGACCAATGCACATGCCACATTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAACTTGTATAGCCAAGGATATGGAACTAACACAGCAGCACTCAGCACTGCCTTGTTCAACAATGGTTTGAGCTGTGGCTCATGCTACCAAATCAAATGTGCAAATGACCCACAATGGTGCCTCCCTGCCACCATTGTTGTCACCGCCACTAATTTCTGCCCCCCTGGTGGATGGTGTGACCCTCCCAATCATCATTTTGATCTCTCTCAACCTGTGTTTCAGCAAATTGCCCAATACAGAGCTGGGATTGTGCCTGTAGTTTACAGAAGGGTACGGTGCATGAGAAGAGGTGGAATCAGGTTCAACATCAATGGTCATTCATACTTCAATTTAGTCCTAGTGACTAATGTTGGGGGTGCTGGTGATGTGCATTCTGTGGCCATCAAAGGTTCAAGGAGTAGATGGCAAGCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTCAATGGACAGAGTCTTTCCTTTTTGGTCACCACTAGTGATGGCCGCAGTGTGCTCTCATACAATGCTGCACCTTCAAGTTGGTCTTTTGGACAGACCTACACCGGAAGGCAATTCCGCTATTAA 765 0.4693 MFTFMKNKMAHLGFFLLLGCLCLSLISYANGYVSSGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYQIKCANDPQWCLPATIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYRAGIVPVVYRRVRCMRRGGIRFNINGHSYFNLVLVTNVGGAGDVHSVAIKGSRSRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPSSWSFGQTYTGRQFRY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2129 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 160 IPR007112 -
Aed9g2129 254 Gene3D - 27 155 IPR036908 -
Aed9g2129 254 PANTHER EXPANSIN-A15 23 253 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 95 106 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Aed9g2129 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Aed9g2129 254 Gene3D - 160 252 IPR036749 -
Aed9g2129 254 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Aed9g2129 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Aed9g2129 254 Pfam Lytic transglycolase 73 150 IPR009009 -
Aed9g2129 254 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Aed9g2129 254 SUPERFAMILY Barwin-like endoglucanases 37 178 IPR036908 -
Aed9g2129 254 SMART dpbb_1 73 150 IPR007112 -
Aed9g2129 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Aed9g2129 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Aed9g2129 254 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Aed9g2129 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Aed9g2129 254 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Aed9g2129 254 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Aed9g2129 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Aed9g2129 254 PANTHER EXPANSIN 23 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2129 Aed-Chr9 24476045 24478534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2129 8 253 Expansin Gene Family AT2G03090 75.591 1.10e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2129 - K20628 gmx:100799370 473.781