Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2121 ATGGCTGCTTCTAGGGATCAGAAAAGAAGAGAGTCTCTGGAAGACACGTTGCAACAACTTCGCGATGTCACAAACTCCACTGCTCTAAACAAAGCTTCAATTATTATAGACGCCTCAAAATACATAGAGGAGTTGAAGCAAAAAGTTGAGGGACTCAACTCAGAGCTGGGAATTGCGGAATCATCAACAACCTCTCAAATTGATGAACTTCCTATGGTAATTGTGAAAACCCTAAAAAAGGGTTTCCTCATTAATGTGGTTTTAGAAAAGAATTGCCCTGGAATGCTCATCTCTATACTCGAAGCCTTCGAAGAACTGGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAAGTCACAAGAACGACAGTGTTGACGCGCAAGTGGTAAAGCAAGCAGTGTTGCGAGCAATCAAGAACGTGGACTAA 462 0.4307 MAASRDQKRRESLEDTLQQLRDVTNSTALNKASIIIDASKYIEELKQKVEGLNSELGIAESSTTSQIDELPMVIVKTLKKGFLINVVLEKNCPGMLISILEAFEELGLDVLDARVSCEDSFQLEAVGRESHKNDSVDAQVVKQAVLRAIKNVD 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2121 153 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 153 - -
Aed9g2121 153 CDD ACT_UUR-ACR-like 93 149 - -
Aed9g2121 153 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 153 - -
Aed9g2121 153 Coils Coil 3 23 - -
Aed9g2121 153 ProSiteProfiles ACT domain profile. 84 153 IPR002912 -
Aed9g2121 153 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 59 IPR036638 GO:0046983
Aed9g2121 153 Pfam Helix-loop-helix DNA-binding domain 4 45 IPR011598 GO:0046983
Aed9g2121 153 Coils Coil 35 62 - -
Aed9g2121 153 Gene3D - 2 61 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2121 Aed-Chr9 24418225 24419651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2121 6 152 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 24.479 7.12e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2121 - - gmx:100527466 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2121 9 24418225 24419651 Aed3g2215 3 25641972 25643515 ECH
Aed9g2121 9 24418225 24419651 Aed2g1014 2 8017760 8019676 ECH
Aed9g2121 9 24418225 24419651 Aed9g2121 9 24418225 24419651 ECH
Aed9g2121 9 24418225 24419651 Aed3g1916 3 23429254 23430491 ECH
Aed9g2121 9 24418225 24419651 Aed4g2189 4 24665170 24666930 ECH