Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2118 TGTTATCGCTTGAGCTTTGTCTTTGGCGATTTCCTTACAAATTTTCTCAAATGGAATGCAAATCCTGCTAGTTATGGGAGTCTTGAGCGTGATATTGAGCAGGCACTCGTTGCCTTAAAAAAAGGGACTCAGTTAATAAAGTACAGTCGAAAAGCCAAGCCAAAAGTTTACCCATTCAGACTTTCTCTGGATGTAACAACAGTAATTTGGATTTCTCACAAGAAGGAAAGGAAATTAAAATTATCTTCAGTTTCACGTATTATTCCTGGACAACGCACTGTTGTCTTTAAAAGATATTTACAGCCTGAAAAAGATTATCTATCACTTTCACTTGTTTATTATAATAACGGGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGACAGAGGTATGGTTTACAGGCCTTAAGACATTAATTTCTACTGGAAAGCTTAGGCGCATTGGAAGTGAATTATATGATGATGGTAATGATTGTATTCCAAATGGTGGTCCTTTTTGTGTAACACTAGAATTTGGTATAAGCGTTACTCATAACAGTGTCCATTTTGATTTTGGTTCTCATCACCATGAGTCTTCTTCAATATTGAATAATCTGGGAACCACAAATGTGGGGTTAGAGCGTGGTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTATTAGTGTGTCGAGTAATCCAAGTGTTTCAAGTTCAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATATATGGGGTGAGGTTTGGGCCGATGTGGTTTCAGCTGATCGATTTTCCACACAAGCCCCTTCCACAACAGATGTGTTGATTCCTAAGCCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTGAGGCACATTGCTCTAGTAACTAGGCAAGGTGAGGTTTTCACTTGGGGAGAAGAATGTGGTGGAAGACTTGGACAAGGAATTGATAGAGATTTTGGTCGTCCTCAACTTGTTGAGTTTTTGGCAGTTACTAGCATGGATTTTGTTGCTTGTGGAGAGAATCACACGTGTGCTGTATCAACTTCTGATGATCTTTTCTCATGGGGTGATGGCAAATACAACGTTGGACTTCTTGGTCATGGAACCGATGTAAGTCATTGGATACCAAAAAGGGTTAGTGGTCCTTTGGAAGGGCTTCAAGTTATATCTATTGCATGTGGCACATGGCATTCAGCACTAGCAACTTCTAATGGGAAACTTTTCACCTTTGGTGATGGAACATTTGGTGTGTTAGGTCATGGAAGTAGAGAGAGTGTTCCATATCCAAAGGAGGTGCAATTGTTAAGTGGATTGAAAACTATCAAGGTTGCATGTGGAGTGTGGCACACTGCAGCTATTGTTGAGGTTACTTTTCAATCCGGTTCAAGTGTTTCATCAAGGAAGCTTTTCACTTGGGGTGATGGTGACAAATATCGTTTGGGACATGGAAACAAGGAAACATACCTTCAACCAACTTGTGTTTCTTCACTCATTGAATACAATTTCCACCAGATTGCATGTGGAAACACCATGACTGTTGCCCTAACTACTTCAGGACATGTTTTTACTATGGGAAGCACTGAGAATGGTCAACTAGGAAACCCTTTAGCTGATGGAAAAGGACCAATCCTAGTACAAGACAAGTTGGTTGGTGAGTTTGTTGAGGAAATATCATGTGGTGCTTATCATGTTGCTGCTTTGACTTCAAGAAGTGAACTATACACTTGGGGGAAAGGTTCCAATGGAAGATTGGGACATGGAGACATAGATGATAGAAAATCTCCAACAGTTGTGGAATCCTTAAAAGACAGGCATGTGAAGAACATCTCTTGTGGCTCAAACTTCACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCCGTTTGCACTGGTTGTAGACAACCATTTGGTTTCACTAGAAAGAGGCATAACTGTTATAACTGTGGATTAGTGCATTGCCATGGTTGTAGTTCAAGAAAGTTAATGAAAGCAGCATTGGCTCCAACACCAGGAAAACCTCATCGTGTGTGTGACTCTTGCTACAATAAGCTTAAAGCTGTTGAATCATGTGCTAGTTCTAATCTTAATAGAAAAATTACAAGTACTCCAACTCGTAATTCAATAGATAACAACAGAGAAAGACTGTTTGGCCCAGGAGAAATAAAGTCTTCAAGGCTTATTTTGCCTCCTATCACTGAACCAATGAAATTTCATCAGATAATGGCTAGTAATATGGGAAACAAATATGATTTTCCTTCCATGGCTTCAGCTTCTCAAGTTCCATCACTTCTACAATTGAATGATATTGCATTTGGTAACTCAATAAGTTCATCAACTCAGAATGTTTTGAAGTCTTCTATAACTCTTAATCCACCACCAACTTCACCTCTCAATTCAAGACCTGTATCTCCTTATTCAAAAAGGCCAAGCCCTCCACGTTCTAGAACTCCAGGATTTTCTAGAAGTCTTATTGATAGCTTGAGGAAGACAAATGAACTTTTGAATCATGAAGTTTCAAAAACGCAAAGCCAGATTCGAAGTTTGAAGATGAGAAATGAAATGCAAATTCGAAAGCTCCAGAAAGATCTCACAGAAGCTAACTCCTTTGCTTTAGAGGAATCCTCTAAGCATAAAGCAATGAAAGAATTTTTTGAGTCTACGGTAGATCAGATGAAGGAAATGATTGAGAAGTTGCCACCAGAAGTTTTAGATAGTGATCATGAAAATTGGAAAACCGTGCTTACTCAAGCTGAGAACTTTCTAAAAGAAAATTTAGAATTTGAAGCACCATCAAGTGTGAAGTCTCATCAACAAAATGCTCCTAATTCACCTGACTCAAATAGTGACTCTTCTAAATTGCAAGAACATAGAATAGAAGAAAATAATGAAACTGCAGGAGTTGCATCACAAGATGAAGGAAATGTTCTTCAAGAAAGCAATAGCTCATCTTTATCAAACAATGAAGCATCAATGTCTTTACAAAACTCCGAAAATGATTCAAAATTGCATGACTCTTCTTCAAAACCAGTAGAAACACAAGTCATTGAACAATTTGAAGCTGGTGTATATGTGACACTAGTAGTAAGGCCTGATGGTGTCAAAACTTTCAAACGAGTCAAATTCAGTAAACGAAGATTCCATGAACATCAAGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAGGAAATATAGTACTCCACATGCTACAAGTTCTGAAGGAATTGGATCATCTAATAATTTACCACCACTACCACCACCTACAGTGGAAAATACGGAAGAAACTTGA 3330 0.3856 CYRLSFVFGDFLTNFLKWNANPASYGSLERDIEQALVALKKGTQLIKYSRKAKPKVYPFRLSLDVTTVIWISHKKERKLKLSSVSRIIPGQRTVVFKRYLQPEKDYLSLSLVYYNNGERTLDLICKDKDETEVWFTGLKTLISTGKLRRIGSELYDDGNDCIPNGGPFCVTLEFGISVTHNSVHFDFGSHHHESSSILNNLGTTNVGLERGNMQPRTSIGDGFRISVSSNPSVSSSGSGPDDIESLGDVYIWGEVWADVVSADRFSTQAPSTTDVLIPKPLESSVVLDVQQIASGVRHIALVTRQGEVFTWGEECGGRLGQGIDRDFGRPQLVEFLAVTSMDFVACGENHTCAVSTSDDLFSWGDGKYNVGLLGHGTDVSHWIPKRVSGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGSRESVPYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSSVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSSLIEYNFHQIACGNTMTVALTTSGHVFTMGSTENGQLGNPLADGKGPILVQDKLVGEFVEEISCGAYHVAALTSRSELYTWGKGSNGRLGHGDIDDRKSPTVVESLKDRHVKNISCGSNFTSCICIHKWVSGVDQSVCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKLMKAALAPTPGKPHRVCDSCYNKLKAVESCASSNLNRKITSTPTRNSIDNNRERLFGPGEIKSSRLILPPITEPMKFHQIMASNMGNKYDFPSMASASQVPSLLQLNDIAFGNSISSSTQNVLKSSITLNPPPTSPLNSRPVSPYSKRPSPPRSRTPGFSRSLIDSLRKTNELLNHEVSKTQSQIRSLKMRNEMQIRKLQKDLTEANSFALEESSKHKAMKEFFESTVDQMKEMIEKLPPEVLDSDHENWKTVLTQAENFLKENLEFEAPSSVKSHQQNAPNSPDSNSDSSKLQEHRIEENNETAGVASQDEGNVLQESNSSSLSNNEASMSLQNSENDSKLHDSSSKPVETQVIEQFEAGVYVTLVVRPDGVKTFKRVKFSKRRFHEHQAEEWWNKNKDRVLRKYSTPHATSSEGIGSSNNLPPLPPPTVENTEET 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2118 1109 MobiDBLite consensus disorder prediction 975 1012 - -
Aed9g2118 1109 Gene3D - 30 148 IPR011993 -
Aed9g2118 1109 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 635 697 IPR017455 -
Aed9g2118 1109 MobiDBLite consensus disorder prediction 942 961 - -
Aed9g2118 1109 MobiDBLite consensus disorder prediction 1070 1109 - -
Aed9g2118 1109 Pfam FYVE zinc finger 631 697 IPR000306 GO:0046872
Aed9g2118 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 475 526 IPR000408 -
Aed9g2118 1109 MobiDBLite consensus disorder prediction 798 833 - -
Aed9g2118 1109 SUPERFAMILY RCC1/BLIP-II 246 632 IPR009091 -
Aed9g2118 1109 CDD PH_PLC_plant-like 30 143 - -
Aed9g2118 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 413 464 IPR000408 -
Aed9g2118 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 451 461 IPR000408 -
Aed9g2118 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 412 IPR000408 -
Aed9g2118 1109 Pfam Transcription factor BRX N-terminal domain 884 917 IPR027988 -
Aed9g2118 1109 SUPERFAMILY PH domain-like 31 142 - -
Aed9g2118 1109 Coils Coil 836 863 - -
Aed9g2118 1109 ProSiteProfiles BRX domain profile. 1024 1079 IPR013591 -
Aed9g2118 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 698 IPR013083 -
Aed9g2118 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 527 578 IPR000408 -
Aed9g2118 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 33 1086 - -
Aed9g2118 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Aed9g2118 1109 MobiDBLite consensus disorder prediction 806 823 - -
Aed9g2118 1109 Gene3D - 226 471 IPR009091 -
Aed9g2118 1109 Gene3D - 472 643 IPR009091 -
Aed9g2118 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 580 627 IPR000408 -
Aed9g2118 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 477 523 IPR000408 -
Aed9g2118 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 306 354 IPR000408 -
Aed9g2118 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 412 461 IPR000408 -
Aed9g2118 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 359 408 IPR000408 -
Aed9g2118 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 526 575 IPR000408 -
Aed9g2118 1109 PRINTS Chromosome condensation regulator RCC1 signature 308 324 IPR000408 -
Aed9g2118 1109 PRINTS Chromosome condensation regulator RCC1 signature 399 415 IPR000408 -
Aed9g2118 1109 PRINTS Chromosome condensation regulator RCC1 signature 574 595 IPR000408 -
Aed9g2118 1109 PRINTS Chromosome condensation regulator RCC1 signature 415 429 IPR000408 -
Aed9g2118 1109 PRINTS Chromosome condensation regulator RCC1 signature 358 374 IPR000408 -
Aed9g2118 1109 PRINTS Chromosome condensation regulator RCC1 signature 516 534 IPR000408 -
Aed9g2118 1109 MobiDBLite consensus disorder prediction 1079 1093 - -
Aed9g2118 1109 Pfam Transcription factor regulating root and shoot growth via Pin3 1024 1078 IPR013591 -
Aed9g2118 1109 MobiDBLite consensus disorder prediction 941 1020 - -
Aed9g2118 1109 SUPERFAMILY FYVE/PHD zinc finger 631 703 IPR011011 -
Aed9g2118 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 579 630 IPR000408 -
Aed9g2118 1109 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 33 1086 - -
Aed9g2118 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 292 302 IPR000408 -
Aed9g2118 1109 SMART fyve_4 629 698 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2118 Aed-Chr9 24378418 24384341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2118 1017 1078 Major Intrinsic Protein MIP AT1G31880 37.097 4.94e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2118 - - gmx:100779684 1722.21