Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2072 ATGAAGCAAGTAGTAGGAATGGTGGTTTCCAATAAGATGCAGAAATCGGTTGTGGTGGCAGTGGATCGACTTTTCTACCACAAAGTGTACGACCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCATGATGAGCAAAACCTCTGTAACATTGGTGACAAAGTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAAAATTGGGTTGTTGCTGATATTCTTAAGAAGGCACGGATATATGTTCCACCCTCCACCCGTGTCTGA 267 0.4419 MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDEQNLCNIGDKVRLDPSRPLSKHKNWVVADILKKARIYVPPSTRV 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2072 88 Gene3D - 1 86 IPR012340 -
Aed9g2072 88 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Aed9g2072 88 SUPERFAMILY Nucleic acid-binding proteins 2 85 IPR012340 -
Aed9g2072 88 PANTHER 37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL 1 86 - -
Aed9g2072 88 Pfam Ribosomal protein S17 6 72 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed9g2072 88 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed9g2072 88 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed9g2072 88 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Aed9g2072 88 TIGRFAM uS17_bact: ribosomal protein uS17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Aed9g2072 88 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 86 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2072 Aed-Chr9 23943506 23945518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2072 6 65 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 40.984 8.39e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2072 K02961 - gmx:100794499 170.629