Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2055 ATGGAAGAAGATCAGAGACATAATGGCTCAGAATGTTCCAAGACAAGCCCTTCTAACGAAGAAGATTGTGATGAAGAAGAAAGTGATGAGGGAAACAACGGAGGAAGCTCAAGCAACAGCACTGTGGAAGAGAATAACGAGAAGAAAACAACAACAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTGCGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTAGTTCTTCAGTTGATGAATATCAAAGGTTTAAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTAGACACAAATCAAGTTTTGGCTGATCCTAGGCTTCTTAAGCTGGAGACAGAAATGTTTACAATCTTAGCCAACTTCCCATGCTTCAAGGCTACGATCCAAGCCAATACAGGCACACATACTGCTACAACTTTCACTTCAAATTCTCTCAAACATGCATTTAGAATTGCAAAAAGCTCAAATAAGATTCTTTCTAATTCTTTTTACAGATATGGATATGCGGATGCTTCTCTTGCTATCTATGAAAACATGGTGCACAGGCCTTTCATGAATAGGAGTTCATTAGATGAATCTGGAGCTGATCAATTTTGTGGCAGCAGATTAACTGAGAGAATCCATGGCACCAATAATAGTAACATCAATTGGACTCATCATAATATGTTCCAAGTTCATTCTTCTTCTAGTTTTAATGAACCATCAACAAGTAAAGTCCATGAACCAAAACATAAGCTCTTCTCATTTGGTGGCAATGAATCCTTATGCACACAATCAACTCAGCTGCAAACAAGTGCACAAGATACATCAAATCCAGTGGAACTGAGGACCTTGAAAAGAAAGGCTTCAGATATTGACCTTGATTTGAATCTGTCACTTAAGTTAAATTCAAAGGTCAGTACTGCTGAGAAATTAAAAGAAAGCATGGTGGTGGACCATGAAGTTGTTGATAGCAATCTATCACTTTCTTTGTGTTCACAATCCTCATCCTTCAGCAGCAACAGGTTGAAAAAATCACAAGATCATTCTAAGGAGCAAGGGGAAATTATTAAAGCCAGTGCTTTGGATCTGACTATATGA 1146 0.3901 MEEDQRHNGSECSKTSPSNEEDCDEEESDEGNNGGSSSNSTVEENNEKKTTTVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDTNQVLADPRLLKLETEMFTILANFPCFKATIQANTGTHTATTFTSNSLKHAFRIAKSSNKILSNSFYRYGYADASLAIYENMVHRPFMNRSSLDESGADQFCGSRLTERIHGTNNSNINWTHHNMFQVHSSSSFNEPSTSKVHEPKHKLFSFGGNESLCTQSTQLQTSAQDTSNPVELRTLKRKASDIDLDLNLSLKLNSKVSTAEKLKESMVVDHEVVDSNLSLSLCSQSSSFSSNRLKKSQDHSKEQGEIIKASALDLTI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2055 381 MobiDBLite consensus disorder prediction 1 56 - -
Aed9g2055 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 118 IPR017930 -
Aed9g2055 381 PANTHER - 9 132 - -
Aed9g2055 381 PANTHER - 280 381 - -
Aed9g2055 381 PANTHER - 183 295 - -
Aed9g2055 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 132 IPR044848 GO:0003700
Aed9g2055 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 62 117 IPR006447 GO:0003677
Aed9g2055 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 280 381 IPR044848 GO:0003700
Aed9g2055 381 Pfam Myb-like DNA-binding domain 64 114 IPR001005 -
Aed9g2055 381 Gene3D - 61 118 - -
Aed9g2055 381 MobiDBLite consensus disorder prediction 32 46 - -
Aed9g2055 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 183 295 IPR044848 GO:0003700
Aed9g2055 381 SUPERFAMILY Homeodomain-like 61 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2055 Aed-Chr9 23790251 23791808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2055 41 119 G2-like Transcription Factor Family AT2G42660 69.318 2.08e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed9g2055 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2055 - - gsj:114395715 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2055 9 23790251 23791808 Aed2g1082 2 8728083 8729729 ECH
Aed9g2055 9 23790251 23791808 Aed9g2055 9 23790251 23791808 ECH
Aed9g2055 9 23790251 23791808 Aed2g1082 2 8728083 8729729 PCT