Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2054 ATGACAACCGCTCCGCCTATGGCCACAGCGTACATGGAGCACCTCCCGGCGGTGCCAGGCTGGCTGAACAAAGGTGACAACGCGTGGCAGCTGACGGCGGCGACGCTGGTCGGGCTCCAGAGCATGCCGGGGCTGGTGATCCTCTACGCCAGCATAGTGAAGAAGAAATGGGCGGTGAACTCAGCCTTCATGGCTCTCTACGCCTTTGCGGCGGTTCTGATATGTTGGGTGCTTGTGTGCTACCGAATGGCTTTCGGGGAGAAGCTTTTCCCCTTCTGGGGAAAAGGTGCTCCAGCGCTTGGCCAGAAGTTTCTCACGAAACGAGCCATAGTGACGGAAACAACACACTACCACAACAATGGCACTATTGAATCCCCTGCTGAGGAACCCTTTTACCCCATGGCTTCGCTTGTTTATTTCCAATTCACTTTTGCTGCTATTACTCTTATTTTGTTGGCTGGCTCTGTTCTTGGCCGCATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTGATCTTTTCCTACACTGTTGGGGCTTTCAGCCTCTGGGGTGGTGGCTTTCTCTACCAGTGGGGGGTTATTGATTATTCTGGCGGCTATGTTATTCACCTTTCTTCTGGAATCGCTGGCTTAACTGCTGCTTATTGGGTTGGACCAAGGTTGAAGAGTGATAGGGAGAGGTTTCCACCAAACAACGTGCTTCTGATGCTTGCGGGTGCTGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAACGGTGGAGCACCATATGCTGCAAGCATTGCAGCTTCAGTTGCAGTGTTGAACACAAACATTTGTGCAGCCACTAGCCTCCTTGTGTGGACAACTTTGGATGTCATTTTCTTTGGGAAACCTTCGGTGATTGGAGCTGTTCAAGGCATGATGACAGGACTTGTATGCATCACCCCTGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATAGTGATGGGAATATTATCTGGGAGCATTCCATGGGTCACAATGATGATTTTGCACAAAAAGTCAACCTTGTTGCAAAAGGTAGATGACACCCTTGGTGTGTTTCACACACATGCTGTGGCTGGCCTTTTGGGTGGTCTTCTCACAGGTCTATTCGCAGAGCCAGCCCTATGTAGACTACTATTGCCAGTTTCTAACTCAAGGGGTGCATTCTATGGTGGAGATGGTGGCATGCAGTTCTTTAAGCAAGTAGTGGCAGCTATGTTTGTCATTGGATGGAATTTGGTCTCCACCACCATCATCCTCCTTGTAATCAAACTCTTCATACCCTTGAGGATGCCGGACGAGCAACTTGAAATCGGTGATGACGCCGTCCATGGCGAAGAAGCATATGCCCTATGGGGTGATGGAGAGAAATATGACCCTACTAGGCATGGTTCCTTGCAGAGTGGCAACACTACTGTGTCACCTTATGTGAATGGTGCAAGAGGGGTCACTATAAACTTGTGA 1473 0.5044 MTTAPPMATAYMEHLPAVPGWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGEKLFPFWGKGAPALGQKFLTKRAIVTETTHYHNNGTIESPAEEPFYPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAASIAASVAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKSTLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPALCRLLLPVSNSRGAFYGGDGGMQFFKQVVAAMFVIGWNLVSTTIILLVIKLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSLQSGNTTVSPYVNGARGVTINL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2054 490 PRINTS Rhesus blood group protein signature 267 289 IPR002229 GO:0005887
Aed9g2054 490 PRINTS Rhesus blood group protein signature 236 254 IPR002229 GO:0005887
Aed9g2054 490 PRINTS Rhesus blood group protein signature 141 157 IPR002229 GO:0005887
Aed9g2054 490 PRINTS Rhesus blood group protein signature 322 340 IPR002229 GO:0005887
Aed9g2054 490 TIGRFAM amt: ammonium transporter 26 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Aed9g2054 490 Pfam Ammonium Transporter Family 28 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
Aed9g2054 490 ProSitePatterns Ammonium transporters signature. 197 222 IPR018047 GO:0008519|GO:0016020|GO:0072488
Aed9g2054 490 SUPERFAMILY Ammonium transporter 21 434 - -
Aed9g2054 490 PANTHER AMMONIUM TRANSPORTER MEP2 8 487 IPR001905 GO:0008519|GO:0016020|GO:0072488
Aed9g2054 490 Gene3D Ammonium transporter AmtB like domains 4 455 IPR029020 -
Aed9g2054 490 PANTHER AMMONIUM TRANSPORTER 8 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2054 Aed-Chr9 23778888 23783118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2054 134 490 Inorganic Solute Cotransporters AT2G38290 76.880 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2054 K03320 - gmx:100790119 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2054 9 23778888 23783118 Aed9g2054 9 23778888 23783118 ECH